SMTL ID : 3d41.1

Crystal structure of fosfomycin resistance kinase FomA from Streptomyces wedmorensis complexed with MgAMPPNP and fosfomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ANP.5 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 21 residues within 4Å: Chain A: K.29, G.31, G.32, S.33, K.38, H.78, L.189, T.190, D.191, V.192, G.194, I.195, V.196, A.220, L.221, W.222, D.228, A.232, M.233, K.236 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:K.29, A:G.32, A:S.33, A:S.33, A:K.38, A:H.78, A:L.189, A:D.191, A:V.196, A:A.220, A:W.222, A:D.228, A:D.228, A:M.233, A:K.236 Water bridges: A:G.73, A:T.230, A:T.230, A:A.232 Salt bridges: A:K.236 pi-Stacking: A:W.222, A:W.222, A:W.222 ANP.5: 21 residues within 4Å: Chain B: K.29, G.31, G.32, S.33, K.38, H.78, L.189, T.190, D.191, V.192, G.194, I.195, V.196, A.220, L.221, W.222, D.228, A.232, M.233, K.236 Ligands: MG.4 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:K.29, B:G.32, B:S.33, B:S.33, B:K.38, B:H.78, B:L.189, B:T.190, B:D.191, B:V.196, B:A.220, B:W.222, B:D.228, B:D.228, B:M.233, B:K.236 Water bridges: B:G.73, B:T.230, B:T.230, B:A.232 Salt bridges: B:K.236 pi-Stacking: B:W.222, B:W.222, B:W.222

2 x FCN: FOSFOMYCIN(Non-covalent)

FCN.3: 9 residues within 4Å: Chain A: G.72, G.73, G.77, H.78, I.81, F.167, S.168, S.169, T.230 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.73, A:S.168, A:S.169, A:S.169 Water bridges: A:K.29, A:K.29, A:K.29, A:S.71, A:G.74, A:G.154, A:S.168 FCN.6: 9 residues within 4Å: Chain B: G.72, G.73, G.77, H.78, I.81, F.167, S.168, S.169, T.230 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.73, B:S.168, B:S.169, B:S.169, B:T.230 Water bridges: B:K.29, B:K.29, B:K.29, B:S.71, B:G.74, B:G.154, B:S.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pakhomova, S. et al., Crystal Structure of Fosfomycin Resistance Kinase FomA from Streptomyces wedmorensis. J.Biol.Chem. (2008)

Release Date

2008-08-12

Peptides

FomA protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FomA protein

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