SMTL ID : 3d4g.2 (7 other biounits)

ZP-N domain of mammalian sperm receptor ZP3 (crystal form II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 15 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.66, A:R.67, A:Y.156 Water bridges: A:D.66

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: D.42 No protein-ligand interaction detected (PLIP) CA.3: 3 residues within 4Å: Chain A: V.182, D.185, Q.366 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.182, A:D.185, H2O.6 CA.4: 3 residues within 4Å: Chain A: S.234, K.296, D.297 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.234, A:K.296, A:D.297, H2O.6, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Monne, M. et al., Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats. Nature (2008)

Release Date

2008-12-02

Peptides

Maltose-binding periplasmic protein, LINKER, Zona pellucida protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Maltose-binding periplasmic protein, LINKER, Zona pellucida protein 3

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