SMTL ID : 3djq.1

Bovine Seminal Ribonuclease- Uridine 5' diphosphate complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 8 residues within 4Å: Chain A: K.41, V.43, N.44, T.45, K.66, H.119, F.120 Chain B: H.12 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.41, A:T.45, A:T.45, A:T.45, A:H.119, B:H.12 Water bridges: A:K.66, A:H.119, A:D.121, A:S.123 Salt bridges: A:K.66 UDP.2: 8 residues within 4Å: Chain A: H.12 Chain B: K.41, V.43, N.44, T.45, R.85, H.119, F.120 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:H.12, B:K.41, B:T.45, B:T.45, B:T.45, B:R.85, B:H.119 Water bridges: A:Q.11, A:Q.11, B:S.123, B:S.123 Hydrophobic interactions: B:V.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dossi, K. et al., Mapping the ribonucleolytic active site of bovine seminal ribonuclease. The binding of pyrimidinyl phosphonucleotide inhibitors. Eur.J.Med.Chem. (2009)

Release Date

2009-06-30

Peptides

Seminal ribonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Seminal ribonuclease

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