SMTL ID : 3djx.1

Bovine Seminal Ribonuclease- cytidine 5' phosphate complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 9 residues within 4Å: Chain A: K.41, V.43, N.44, T.45, R.85, H.119, F.120, S.123 Chain B: H.12 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.43 Hydrogen bonds: A:K.41, A:T.45, A:T.45, A:R.85, A:H.119, A:F.120, A:S.123, A:S.123 Water bridges: A:S.123 C5P.2: 8 residues within 4Å: Chain A: H.12 Chain B: K.41, V.43, N.44, T.45, R.85, H.119, F.120 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.43 Hydrogen bonds: B:K.41, B:T.45, B:T.45, B:T.45, B:R.85, B:H.119, A:Q.11, A:H.12 Water bridges: B:F.120, B:S.123, B:S.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dossi, K. et al., Mapping the ribonucleolytic active site of bovine seminal ribonuclease. The binding of pyrimidinyl phosphonucleotide inhibitors. Eur.J.Med.Chem. (2009)

Release Date

2009-06-30

Peptides

Seminal ribonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Seminal ribonuclease

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