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SMTL ID : 3dyb.1

proteinase K- digalacturonic acid complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x ADA- ADA: alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid(Non-covalent)

ADA-ADA.1:

4 residues within 4Å:

Chain A: S.143, A.146, R.147, S.150

No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2:	5 residues within 4Å: Chain A: P.175, V.177, C.178, T.179, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.175, A:V.177, A:D.200, H₂O.1, H₂O.5
CA.3:	3 residues within 4Å: Chain A: N.163, A.164, Y.195 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:N.163, A:Y.195, H₂O.3, H₂O.6, H₂O.6, H₂O.6

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4:

8 residues within 4Å:

Chain A: N.5, A.6, P.7, W.8, T.81, Y.82, R.185, L.209

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:W.8
Water bridges: A:Y.82
Salt bridges: A:R.185

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Larson, S.B. et al., High-resolution structure of proteinase K cocrystallized with digalacturonic acid. Acta Crystallogr.,Sect.F (2009)

Release Date

2008-10-07

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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