SMTL ID : 3e30.3 (2 other biounits)

Protein farnesyltransferase complexed with FPP and ethylene diamine inhibitor 4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.297, C.299, H.362 Ligands: ED4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.297, A:D.297, A:C.299, A:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 13 residues within 4Å: Chain A: W.102, R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: ED4.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.102, A:Y.205, A:W.303 Hydrogen bonds: A:Y.300 Water bridges: A:R.291, A:R.291, A:K.294, A:L.295, A:L.295, A:L.295 Salt bridges: A:H.248, A:R.291, A:R.291, A:K.294, A:K.294

1 x ED4: TERT-BUTYL 4-({(2-{(4-CYANOPHENYL)[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]AMINO}ETHYL)[(1-METHYL-1H-IMIDAZOL-4-YL)SULFONYL]AMINO}METHYL)PIPERIDINE-1-CARBOXYLATE(Non-covalent)

ED4.3: 16 residues within 4Å: Chain A: Y.93, L.96, A.98, S.99, W.102, H.149, A.151, D.297, C.299, Y.300, D.359, F.360, Y.361, H.362 Ligands: ZN.1, FPP.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.361 Hydrogen bonds: A:F.360, A:Y.361 pi-Stacking: A:Y.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hast, M.A. et al., Structural basis for binding and selectivity of antimalarial and anticancer ethylenediamine inhibitors to protein farnesyltransferase. Chem.Biol. (2009)

Release Date

2009-03-10

Peptides

Protein farnesyltransferase subunit beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein farnesyltransferase subunit beta

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