SMTL ID : 3dpy.1

Protein farnesyltransferase complexed with FPP and caged TKCVIM substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VAL- ILE- MET: caged substrate(Non-covalent)

VAL-ILE-MET.1: 12 residues within 4Å: Chain A: Y.131, Y.166, Q.167 Chain B: A.98, S.99, W.102, H.149, A.151, P.152, R.202, Y.361 Ligands: FPP.3 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.102, B:Y.361 Hydrogen bonds: B:R.202, A:Q.167

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.3: 14 residues within 4Å: Chain A: K.164, Y.166, H.201 Chain B: R.202, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: VAL-ILE-MET.1 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.202, B:W.303 Water bridges: B:R.291, B:R.291, B:R.291, B:R.291, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 4 residues within 4Å: Chain B: Y.81, L.89, T.90, Y.93 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.81 Hydrogen bonds: B:T.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeGraw, A.J. et al., Caged protein prenyltransferase substrates: tools for understanding protein prenylation. Chem.Biol.Drug Des. (2008)

Release Date

2008-09-30

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha: A
Protein farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Protein farnesyltransferase subunit beta

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