SMTL ID : 3e92.1

Crystal Structure of P38 Kinase in Complex with A Biaryl Amide Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x G6A: N-cyclopropyl-2',6-dimethyl-4'-(5-methyl-1,3,4-oxadiazol-2-yl)biphenyl-3-carboxamide(Non-covalent)

G6A.1: 16 residues within 4Å: Chain A: Y.46, A.62, K.64, E.82, L.86, I.95, T.117, H.118, L.119, M.120, G.121, A.122, L.178, D.179, F.180, L.182 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.46, A:A.62, A:E.82, A:L.86, A:L.86, A:I.95, A:T.117, A:L.178, A:F.180 Hydrogen bonds: A:E.82, A:E.82, A:M.120, A:G.121, A:A.122, A:D.179

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: D.136, F.140, Y.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.136, A:Y.322 GOL.3: 2 residues within 4Å: Chain A: R.231, T.232 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.231, A:T.232 Water bridges: A:T.232 GOL.4: 4 residues within 4Å: Chain A: K.87, D.354, E.355, S.358 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.87, A:S.358, A:S.358 Water bridges: A:D.354, A:D.354, A:E.355, A:E.355 GOL.5: 6 residues within 4Å: Chain A: V.128, Q.131, L.133, L.227, L.228, G.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.128, A:L.133, A:L.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baldwin, I. et al., Kinase array design, back to front: Biaryl amides. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-09-30

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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