SMTL ID : 3mpt.1

Crystal structure of P38 kinase in complex with a pyrrole-2-carboxamide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x 1GK: N-(furan-2-ylmethyl)-4-[(2-methylphenyl)carbonyl]-1H-pyrrole-2-carboxamide(Non-covalent)

1GK.1: 13 residues within 4Å: Chain A: A.62, K.64, L.86, L.115, T.117, H.118, L.119, M.120, G.121, A.122, D.123, A.168, L.178 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.64, A:L.86, A:L.115, A:T.117, A:L.119 Hydrogen bonds: A:T.117, A:H.118, A:M.120 pi-Cation interactions: A:K.64

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.80, S.337, R.341 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.337, A:R.341, A:R.341 Water bridges: A:F.338, A:E.355, A:E.355 GOL.3: 4 residues within 4Å: Chain A: D.187, M.205, L.206, N.207 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.207 Water bridges: A:D.187, A:H.239 GOL.4: 3 residues within 4Å: Chain A: D.136, F.140, Y.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.322 Water bridges: A:H.137, A:D.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Down, K. et al., The discovery and initial optimisation of pyrrole-2-carboxamides as inhibitors of p38alpha MAP kinase. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-07-07

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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