- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-pentamer
- Ligands
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 15 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.2: 8 residues within 4Å:- Chain A: F.121, Y.194, I.198, L.203, Y.254, N.307, F.315
- Ligands: PC1.5
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.121, A:Y.194, A:I.198, A:L.203, A:Y.254
- Hydrogen bonds: A:Y.194
PC1.3: 7 residues within 4Å:- Chain A: F.265, R.287, I.291, A.294, S.295, F.299
- Ligands: PC1.4
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.265, A:A.294, A:F.299
PC1.4: 10 residues within 4Å:- Chain A: I.271, T.274, V.275, Y.278, E.282, Q.284
- Chain E: F.210, W.217, R.296
- Ligands: PC1.3
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:I.271, A:T.274, A:V.275, E:W.217
- Hydrogen bonds: A:Q.284
PC1.5: 11 residues within 4Å:- Chain A: F.210, W.217, R.296, L.304
- Chain B: V.275, Y.278, E.282, Q.284, R.287
- Ligands: PC1.2, PC1.8
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:V.275, B:Y.278, A:W.217, A:L.304
- Hydrogen bonds: B:Q.284
PC1.7: 8 residues within 4Å:- Chain B: R.118, Y.194, I.198, L.203, Y.254, I.258, N.307, F.315
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.198, B:L.203, B:Y.254, B:I.258
- Hydrogen bonds: B:R.118, B:Y.194
PC1.8: 8 residues within 4Å:- Chain B: F.265, E.272, S.290, I.291, A.294, S.295, F.299
- Ligands: PC1.5
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.265, B:E.272, B:A.294
PC1.10: 11 residues within 4Å:- Chain B: F.210, W.217, P.300
- Chain C: I.271, V.275, Y.278, L.279, E.282, Q.284, R.287
- Ligands: PC1.13
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:I.271, C:Y.278, B:F.210, B:W.217, B:W.217, B:P.300
- Hydrogen bonds: C:R.287
PC1.12: 11 residues within 4Å:- Chain C: F.121, S.191, Y.194, I.198, I.202, L.203, L.206, Y.254, I.258, N.307, F.315
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:Y.194, C:I.198, C:I.202, C:L.203, C:L.206, C:Y.254, C:I.258
- Hydrogen bonds: C:Y.194
- Salt bridges: C:E.163
PC1.13: 9 residues within 4Å:- Chain C: F.265, V.268, R.287, I.291, A.294, S.295, A.298, F.299
- Ligands: PC1.10
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.265, C:V.268, C:A.298, C:F.299
- Salt bridges: C:R.287
PC1.14: 11 residues within 4Å:- Chain C: F.210, W.217, F.303
- Chain D: I.271, V.275, Y.278, L.279, E.282, Q.284, R.287
- Ligands: PC1.16
8 PLIP interactions:3 interactions with chain D, 5 interactions with chain C- Hydrophobic interactions: D:I.271, D:V.275, D:Y.278, C:F.210, C:W.217, C:W.217, C:W.217, C:F.303
PC1.15: 8 residues within 4Å:- Chain D: F.121, Y.194, I.198, L.203, Y.254, I.258, N.307, F.315
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:F.121, D:F.121, D:F.121, D:I.198, D:L.203, D:Y.254, D:I.258
- Hydrogen bonds: D:Y.194
PC1.16: 9 residues within 4Å:- Chain D: F.265, V.268, R.287, I.291, A.294, S.295, A.298, F.299
- Ligands: PC1.14
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:F.265, D:V.268, D:A.298
- Salt bridges: D:R.287
PC1.19: 11 residues within 4Å:- Chain D: F.210, W.217
- Chain E: I.271, T.274, V.275, Y.278, L.279, E.282, Q.284, R.287
- Ligands: PC1.21
8 PLIP interactions:5 interactions with chain E, 3 interactions with chain D- Hydrophobic interactions: E:T.274, E:V.275, E:Y.278, D:W.217, D:W.217, D:W.217
- Hydrogen bonds: E:Q.284
- Salt bridges: E:R.287
PC1.20: 8 residues within 4Å:- Chain E: R.118, F.121, S.191, Y.194, Y.254, I.258, N.307, F.315
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:F.121, E:Y.194, E:I.258
- Hydrogen bonds: E:R.118
PC1.21: 8 residues within 4Å:- Chain E: F.265, R.287, I.291, A.294, A.298, F.299, V.302
- Ligands: PC1.19
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:F.265, E:A.298, E:V.302, E:V.302
- Salt bridges: E:R.287
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bocquet, N. et al., X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation. Nature (2009)
- Release Date
- 2008-11-04
- Peptides
- Glr4197 protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-pentamer
- Ligands
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 15 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bocquet, N. et al., X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation. Nature (2009)
- Release Date
- 2008-11-04
- Peptides
- Glr4197 protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.