SMTL ID : 3ela.1

Crystal structure of active site inhibited coagulation factor VIIA mutant in complex with soluble tissue factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 4 residues within 4Å: Chain A: Q.49, S.52, P.54, Y.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.52, A:S.52

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.2: 7 residues within 4Å: Chain A: G.58, S.60, F.71, C.72, L.73 Chain C: R.131, F.140 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:F.140, A:F.71 Hydrogen bonds: C:R.131, C:R.131, A:S.60

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain B: E.58, D.60, E.63, D.65, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.68, H2O.4, H2O.5

1 x 0Z6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)

0Z6.4: 21 residues within 4Å: Chain B: H.41, G.85, T.86, T.87, D.167, S.168, D.186, S.187, C.188, K.189, G.190, D.191, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.87, B:V.210, B:Q.214 Hydrogen bonds: B:S.187, B:G.190, B:S.192, B:S.211, B:G.213, B:G.213, B:G.215 Water bridges: B:D.186, B:G.215 Salt bridges: B:D.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjelke, J.R. et al., Mechanism of the Ca2+-induced enhancement of the intrinsic factor VIIa activity. J.Biol.Chem. (2008)

Release Date

2008-11-04

Peptides

Coagulation factor VIIA light chain: A
Coagulation factor VIIA heavy chain: B
Tissue factor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
T

Coagulation factor VIIA light chain

Coagulation factor VIIA heavy chain

Tissue factor

Related Entries With Identical Sequence