SMTL ID : 2b7d.1

Factor VIIa Inhibitors: Chemical Optimization, Preclinical Pharmacokinetics, Pharmacodynamics, and Efficacy in a Baboon Thrombosis Model

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x C1B: (2R)-2-[5-(5-CARBAMIMIDOYL-1H-BENZOIMIDAZOL-2-YL)-6,2'-DIHYDROXY-5'-UREIDOMETHYL-BIPHENYL-3-YL]-SUCCINIC ACID(Non-covalent)

C1B.1: 18 residues within 4Å: Chain B: L.25, C.26, H.41, C.42, D.44, K.45, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:K.189, B:V.210 Hydrogen bonds: B:H.41, B:D.44, B:K.45, B:D.186, B:S.187, B:G.190, B:S.192, B:S.192, B:G.215 Water bridges: B:D.191, B:W.212, B:G.215, B:T.218 Salt bridges: B:K.189 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, W.B. et al., Factor VIIa inhibitors: Chemical optimization, preclinical pharmacokinetics, pharmacodynamics, and efficacy in an arterial baboon thrombosis model. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-02-14

Peptides

Coagulation factor VII: A
Coagulation factor VII: B
Tissue factor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
T

Coagulation factor VII

Coagulation factor VII

Tissue factor

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