SMTL ID : 1dan.1

Complex of active site inhibited human blood coagulation factor VIIA with human recombinant soluble tissue factor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.1: 4 residues within 4Å: Chain A: Q.49, S.52, P.54, Y.68 No protein-ligand interaction detected (PLIP)

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.2: 5 residues within 4Å: Chain A: G.58, S.60, F.71, C.72 Chain D: R.42 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.42

9 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.46, G.47, Q.49, D.63, Q.64 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.46, A:G.47, A:D.63, A:D.63, A:Q.64 CA.4: 4 residues within 4Å: Chain A: E.7, E.26, E.29 Ligands: CA.5 No protein-ligand interaction detected (PLIP) CA.5: 6 residues within 4Å: Chain A: E.7, E.16, E.26, E.29 Ligands: CA.4, CA.6 No protein-ligand interaction detected (PLIP) CA.6: 8 residues within 4Å: Chain A: A.1, N.2, E.6, E.7, E.16, E.26 Ligands: CA.5, CA.7 No protein-ligand interaction detected (PLIP) CA.7: 5 residues within 4Å: Chain A: A.1, E.6, E.16, E.20 Ligands: CA.6 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:A.1, H2O.2 CA.8: 2 residues within 4Å: Chain A: E.14, E.19 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain A: E.20 No protein-ligand interaction detected (PLIP) CA.10: 2 residues within 4Å: Chain A: E.25, E.29 No protein-ligand interaction detected (PLIP) CA.12: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.63, B:E.68, H2O.4, H2O.6

1 x 0Z6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)

0Z6.11: 20 residues within 4Å: Chain B: H.41, G.85, T.86, T.87, P.169, D.186, S.187, C.188, K.189, G.190, D.191, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223 Ligands: CL.14 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:P.169, B:V.210, B:W.212 Hydrogen bonds: B:S.187, B:S.187, B:G.190, B:D.191, B:S.192, B:S.211, B:G.213, B:G.213, B:G.215, B:G.215 Water bridges: B:Q.214, B:V.224 Salt bridges: B:D.186

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.13: 6 residues within 4Å: Chain B: S.162, W.212, Q.214, H.221, F.222, V.224 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.162, B:S.162, B:S.162, B:Q.214, B:H.221, B:F.222

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 4 residues within 4Å: Chain B: G.213, G.215, C.216 Ligands: 0Z6.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banner, D.W. et al., The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor. Nature (1996)

Release Date

1997-09-04

Peptides

BLOOD COAGULATION FACTOR VIIA light chain: A
BLOOD COAGULATION FACTOR VIIA heavy chain: B
SOLUBLE TISSUE FACTOR: C
SOLUBLE TISSUE FACTOR: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
T

D
U

BLOOD COAGULATION FACTOR VIIA light chain

BLOOD COAGULATION FACTOR VIIA heavy chain

SOLUBLE TISSUE FACTOR

SOLUBLE TISSUE FACTOR

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