SMTL ID : 3epf.3 (3 other biounits)

CryoEM structure of poliovirus receptor bound to poliovirus type 2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-mer

Ligands

6 x SC4: 1[2-CHLORO-4-METHOXY-PHENYL-OXYMETHYL]-4-[2,6-DICHLORO-PHENYL-OXYMETHYL]-BENZENE(Non-covalent)

SC4.1: 16 residues within 4Å: Chain B: I.87, Y.89, L.99, S.105, F.107, M.109, F.111, F.113, Y.136, I.171, V.173, V.176, Y.182, H.184, F.214, L.217 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.87, B:I.87, B:Y.89, B:F.111, B:F.113, B:Y.136, B:Y.136, B:I.171, B:V.176, B:F.214, B:F.214, B:L.217 pi-Stacking: B:Y.182 SC4.3: 18 residues within 4Å: Chain E: A.24, I.25 Chain G: I.87, Y.89, L.99, S.105, F.107, M.109, F.111, F.113, Y.136, I.171, V.173, V.176, Y.182, H.184, F.214, L.217 14 PLIP interactions: 13 interactions with chain G, 1 interactions with chain E Hydrophobic interactions: G:I.87, G:I.87, G:Y.89, G:F.111, G:F.113, G:Y.136, G:Y.136, G:I.171, G:V.176, G:F.214, G:F.214, G:L.217, E:A.24 pi-Stacking: G:Y.182 SC4.5: 18 residues within 4Å: Chain L: I.87, Y.89, L.99, S.105, F.107, M.109, F.111, F.113, Y.136, I.171, V.173, V.176, Y.182, H.184, F.214, L.217 Chain T: A.24, I.25 14 PLIP interactions: 13 interactions with chain L, 1 interactions with chain T Hydrophobic interactions: L:I.87, L:I.87, L:Y.89, L:F.111, L:F.113, L:Y.136, L:Y.136, L:I.171, L:V.176, L:F.214, L:F.214, L:L.217, T:A.24 pi-Stacking: L:Y.182 SC4.7: 16 residues within 4Å: Chain Q: I.87, Y.89, L.99, S.105, F.107, M.109, F.111, F.113, Y.136, I.171, V.173, V.176, Y.182, H.184, F.214, L.217 13 PLIP interactions: 13 interactions with chain Q Hydrophobic interactions: Q:I.87, Q:I.87, Q:Y.89, Q:F.111, Q:F.113, Q:Y.136, Q:Y.136, Q:I.171, Q:V.176, Q:F.214, Q:F.214, Q:L.217 pi-Stacking: Q:Y.182 SC4.9: 16 residues within 4Å: Chain V: I.87, Y.89, L.99, S.105, F.107, M.109, F.111, F.113, Y.136, I.171, V.173, V.176, Y.182, H.184, F.214, L.217 13 PLIP interactions: 13 interactions with chain V Hydrophobic interactions: V:I.87, V:I.87, V:Y.89, V:F.111, V:F.113, V:Y.136, V:Y.136, V:I.171, V:V.176, V:F.214, V:F.214, V:L.217 pi-Stacking: V:Y.182 SC4.11: 18 residues within 4Å: Chain 0: I.87, Y.89, L.99, S.105, F.107, M.109, F.111, F.113, Y.136, I.171, V.173, V.176, Y.182, H.184, F.214, L.217 Chain Y: A.24, I.25 14 PLIP interactions: 1 interactions with chain Y, 13 interactions with chain 0 Hydrophobic interactions: Y:A.24, 0:I.87, 0:I.87, 0:Y.89, 0:F.111, 0:F.113, 0:Y.136, 0:Y.136, 0:I.171, 0:V.176, 0:F.214, 0:F.214, 0:L.217 pi-Stacking: 0:Y.182

6 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 6 residues within 4Å: Chain D: G.1, A.2, I.29 Chain I: V.4, T.27, I.29 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:I.29, I:I.29 Hydrogen bonds: I:T.27 MYR.4: 3 residues within 4Å: Chain I: G.1, A.2, I.29 No protein-ligand interaction detected (PLIP) MYR.6: 3 residues within 4Å: Chain N: G.1, A.2, I.29 No protein-ligand interaction detected (PLIP) MYR.8: 6 residues within 4Å: Chain N: V.4, T.27, I.29 Chain S: G.1, A.2, I.29 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:I.29, N:I.29 Hydrogen bonds: N:T.27 MYR.10: 6 residues within 4Å: Chain 2: V.4, T.27, I.29 Chain X: G.1, A.2, I.29 3 PLIP interactions: 3 interactions with chain 2 Hydrophobic interactions: 2:I.29, 2:I.29 Hydrogen bonds: 2:T.27 MYR.12: 3 residues within 4Å: Chain 2: G.1, A.2, I.29 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, P. et al., Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-11-11

Peptides

Poliovirus receptor: AFKPUZ
Protein VP1: BGLQV0
Protein VP2: CHMRW1
Protein VP4: DINSX2
Protein VP3: EJOTY3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

F
R

K
R

P
R

U
R

Z
R

B
1

G
1

L
1

Q
1

V
1

0
1

C
2

H
2

M
2

R
2

W
2

1
2

D
4

I
4

N
4

S
4

X
4

2
4

E
3

J
3

O
3

T
3

Y
3

3
3

Poliovirus receptor

Protein VP1

Protein VP2

Protein VP4

Protein VP3

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