SMTL ID : 3ewh.1

Crystal structure of the VEGFR2 kinase domain in complex with a pyridyl-pyrimidine benzimidazole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x K11: N-[4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine(Non-covalent)

K11.1: 22 residues within 4Å: Chain A: L.26, V.34, A.52, K.54, E.71, L.75, I.78, V.84, V.85, V.100, T.102, E.103, F.104, C.105, G.108, L.155, H.162, L.171, I.180, C.181, D.182, F.183 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.26, A:V.34, A:A.52, A:K.54, A:L.75, A:I.78, A:V.100, A:T.102, A:L.171 Hydrogen bonds: A:K.54, A:E.71, A:C.105, A:C.105, A:D.182 pi-Stacking: A:F.183

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: W.232, S.236, P.264, D.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cee, V.J. et al., Pyridyl-pyrimidine benzimidazole derivatives as potent, selective, and orally bioavailable inhibitors of Tie-2 kinase. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-08-25

Peptides

vascular endothelial growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

vascular endothelial growth factor receptor 2

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