SMTL ID : 3fol.1

Crystal structure of the Class I MHC Molecule H-2Kwm7 with a Single Self Peptide VNDIFERI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VAL- ASN- ASP- ILE- PHE- GLU- ARG- ILE: 8 residue synthetic peptide(Non-covalent)

VAL-ASN-ASP-ILE-PHE-GLU-ARG-ILE.1: 24 residues within 4Å: Chain A: L.5, Y.7, V.9, E.24, Y.45, Q.63, I.66, N.70, S.73, D.77, T.80, Y.84, R.97, R.99, Q.114, T.143, K.146, W.147, A.150, A.152, R.155, Y.159, W.167, Y.171 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.7, A:V.9, A:Q.63, A:D.77, A:A.152, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:Y.45, A:Y.45, A:Y.59, A:Q.63, A:Q.63, A:N.70, A:N.70, A:S.73, A:D.77, A:R.97, A:R.97, A:R.99, A:R.99, A:Y.159, A:Y.171, A:Y.171 Water bridges: A:D.77 Salt bridges: A:K.146, A:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brims, D.R. et al., Predominant occupation of the class I MHC molecule H-2Kwm7 with a single self-peptide suggests a mechanism for its diabetes-protective effect. Int.Immunol. (2010)

Release Date

2010-01-12

Peptides

MHC: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC

Beta-2-microglobulin

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