SMTL ID : 3fyh.1

Recombinase in complex with ADP and metatungstate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: V.106, F.107, G.108, S.109, G.110, K.111, T.112, Q.113, R.158, Q.161, I.315, T.316, E.317 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.108, A:S.109, A:G.110, A:K.111, A:T.112, A:Q.113, A:Q.113, A:Q.161, A:Q.161, A:Q.257, A:R.296 Water bridges: A:T.112 Salt bridges: A:K.111

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.112 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.112, H2O.1, H2O.1, H2O.1, H2O.1 MG.3: 2 residues within 4Å: Chain A: Q.98, D.246 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:Q.98, A:D.246, H2O.1, H2O.1, H2O.1, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: T.6, D.7, L.8, V.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.6, A:V.11

24 x W: TUNGSTEN ION(Non-covalent)(Non-functional Binders)

W.5: 6 residues within 4Å: Chain A: R.218, R.230 Ligands: W.10, W.11, W.13, W.15 Ligand excluded by PLIP W.6: 4 residues within 4Å: Ligands: W.10, W.11, W.12, W.16 Ligand excluded by PLIP W.7: 4 residues within 4Å: Ligands: W.9, W.14, W.15, W.16 Ligand excluded by PLIP W.8: 4 residues within 4Å: Ligands: W.9, W.12, W.13, W.14 Ligand excluded by PLIP W.9: 4 residues within 4Å: Ligands: W.7, W.8, W.12, W.16 Ligand excluded by PLIP W.10: 4 residues within 4Å: Ligands: W.5, W.6, W.15, W.16 Ligand excluded by PLIP W.11: 6 residues within 4Å: Chain A: R.218, R.230 Ligands: W.5, W.6, W.12, W.13 Ligand excluded by PLIP W.12: 4 residues within 4Å: Ligands: W.6, W.8, W.9, W.11 Ligand excluded by PLIP W.13: 5 residues within 4Å: Chain A: R.230 Ligands: W.5, W.8, W.11, W.14 Ligand excluded by PLIP W.14: 4 residues within 4Å: Ligands: W.7, W.8, W.13, W.15 Ligand excluded by PLIP W.15: 4 residues within 4Å: Ligands: W.5, W.7, W.10, W.14 Ligand excluded by PLIP W.16: 4 residues within 4Å: Ligands: W.6, W.7, W.9, W.10 Ligand excluded by PLIP W.17: 4 residues within 4Å: Ligands: W.22, W.23, W.25, W.27 Ligand excluded by PLIP W.18: 4 residues within 4Å: Ligands: W.22, W.23, W.24, W.28 Ligand excluded by PLIP W.19: 4 residues within 4Å: Ligands: W.21, W.26, W.27, W.28 Ligand excluded by PLIP W.20: 4 residues within 4Å: Ligands: W.21, W.24, W.25, W.26 Ligand excluded by PLIP W.21: 4 residues within 4Å: Ligands: W.19, W.20, W.24, W.28 Ligand excluded by PLIP W.22: 4 residues within 4Å: Ligands: W.17, W.18, W.27, W.28 Ligand excluded by PLIP W.23: 4 residues within 4Å: Ligands: W.17, W.18, W.24, W.25 Ligand excluded by PLIP W.24: 4 residues within 4Å: Ligands: W.18, W.20, W.21, W.23 Ligand excluded by PLIP W.25: 4 residues within 4Å: Ligands: W.17, W.20, W.23, W.26 Ligand excluded by PLIP W.26: 4 residues within 4Å: Ligands: W.19, W.20, W.25, W.27 Ligand excluded by PLIP W.27: 4 residues within 4Å: Ligands: W.17, W.19, W.22, W.26 Ligand excluded by PLIP W.28: 4 residues within 4Å: Ligands: W.18, W.19, W.21, W.22 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal structure of an archaeal Rad51 homologue in complex with a metatungstate inhibitor. Biochemistry (2009)

Release Date

2009-09-01

Peptides

DNA repair and recombination protein radA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair and recombination protein radA

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