SMTL ID : 3fz8.1

Crystal structure of glutamate decarboxylase beta from Escherichia coli: reduced Schiff base with PLP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

6 x PLR: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE(Covalent)

PLR.1: 16 residues within 4Å: Chain A: G.125, S.126, S.127, Q.163, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276, H.465, T.466 Chain B: F.317, S.318 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Q.163, A:T.208 Hydrogen bonds: A:S.126, A:S.127, A:S.273, A:K.276, B:S.318 Salt bridges: A:H.275, A:K.276 PLR.2: 16 residues within 4Å: Chain A: F.317, S.318 Chain B: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276, T.466 11 PLIP interactions: 2 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:F.317, A:S.318, B:S.126, B:S.127, B:S.273, B:K.276 Hydrophobic interactions: B:Q.163, B:T.208, B:K.276 Salt bridges: B:H.275, B:K.276 PLR.3: 17 residues within 4Å: Chain C: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276, H.465, T.466 Chain D: F.317, S.318 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:Q.163, C:Q.163, C:T.208, C:K.276 Hydrogen bonds: C:S.126, C:S.127, C:S.273, D:S.318 Salt bridges: C:H.275, C:K.276 PLR.4: 17 residues within 4Å: Chain C: F.317, S.318 Chain D: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276, H.465, T.466 10 PLIP interactions: 8 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:Q.163, D:Q.163, D:T.208 Hydrogen bonds: D:S.126, D:S.127, D:S.273, C:F.317, C:S.318 Salt bridges: D:H.275, D:K.276 PLR.5: 17 residues within 4Å: Chain E: G.125, S.126, S.127, Q.163, C.165, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276, H.465, T.466 Chain F: F.317, S.318 11 PLIP interactions: 9 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:Q.163, E:T.208, E:K.276 Hydrogen bonds: E:S.126, E:S.127, E:S.273, E:T.466, F:F.317, F:S.318 Salt bridges: E:H.275, E:K.276 PLR.6: 15 residues within 4Å: Chain E: F.317, S.318 Chain F: G.125, S.126, S.127, Q.163, T.208, G.210, T.212, D.243, A.245, S.273, H.275, K.276, T.466 13 PLIP interactions: 11 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:Q.163, F:T.208, F:A.245, F:K.276 Hydrogen bonds: F:S.126, F:S.127, F:T.212, F:S.273, F:K.276, E:F.317, E:S.318 Salt bridges: F:H.275, F:K.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of glutamate decarboxylase beta from Escherichia coli: reduced Schiff base with PLP. to be published

Release Date

2009-02-03

Peptides

Glutamate decarboxylase beta: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Glutamate decarboxylase beta

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