SMTL ID : 3gnr.1

Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase with covalently bound 2-deoxy-2-fluoroglucoside to the catalytic nucleophile E396

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x G2F: 2-deoxy-2-fluoro-alpha-D-glucopyranose(Post Translational Modification)

G2F.1: 12 residues within 4Å: Chain A: Q.31, H.132, N.177, E.178, N.319, Y.321, W.366, E.394, W.444, E.451, W.452, F.460 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.31, A:H.132, A:Y.321, A:W.452 Water bridges: A:N.449 Halogen bonds: A:N.177

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: N.402, P.403, I.405, S.406, I.407, A.410, F.464, K.468 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.402, A:K.468 Water bridges: A:N.402, A:D.466, A:D.466 GOL.3: 6 residues within 4Å: Chain A: A.80, G.83, M.84, D.85, K.122, I.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seshadri, S. et al., Structural and enzymatic characterization of Os3BGlu6, a rice beta-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides. Plant Physiol. (2009)

Release Date

2009-07-21

Peptides

Os03g0212800 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Os03g0212800 protein

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