SMTL ID : 3gol.2 (1 other biounit)

HCV NS5b polymerase in complex with 1,5 benzodiazepine inhibitor (R)-11d

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x XND: (11R)-10-acetyl-11-(2,4-dichlorophenyl)-6-hydroxy-3,3-dimethyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one(Non-covalent)

XND.1: 16 residues within 4Å: Chain A: F.196, R.203, D.322, C.369, S.370, R.389, S.410, G.413, N.414, M.417, Y.418, Q.449, I.450, Y.451, G.452, S.559 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:M.417, A:Y.418, A:Y.451 Hydrogen bonds: A:S.370, A:S.370, A:R.389, A:Y.451, A:G.452, A:S.559 Water bridges: A:R.389

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.223, T.224, D.321 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.224, H2O.1, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGowan, D. et al., 1,5-Benzodiazepine inhibitors of HCV NS5B polymerase. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-06-16

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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