SMTL ID : 3hky.2 (1 other biounit)

HCV NS5B polymerase genotype 1b in complex with 1,5 benzodiazepine 6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x IX6: (11S)-10-[(2,5-dimethyl-1,3-oxazol-4-yl)carbonyl]-11-{2-fluoro-4-[(2-methylprop-2-en-1-yl)oxy]phenyl}-3,3-dimethyl-2,3,4,5,10,11-hexahydrothiopyrano[3,2-b][1,5]benzodiazepin-6-ol 1,1-dioxide(Non-covalent)

IX6.1: 18 residues within 4Å: Chain A: F.196, R.203, C.369, S.370, S.371, L.387, R.389, S.410, G.413, N.414, M.417, Y.418, Q.449, I.450, Y.451, G.452, S.559 Ligands: SO4.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.387, A:M.417, A:Y.418, A:Y.451, A:Y.451 Hydrogen bonds: A:S.370, A:S.370, A:R.389, A:S.559 Water bridges: A:C.369, A:S.370

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: F.148, R.161, S.370, R.389, T.393, R.397 Ligands: IX6.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.161, A:S.370, A:T.393 Salt bridges: A:K.158, A:R.389, A:R.397 SO4.4: 2 residues within 4Å: Chain A: G.519, R.520 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.520 Salt bridges: A:R.520

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: C.226 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nyanguile, O. et al., 1a/1b subtype profiling of nonnucleoside polymerase inhibitors of hepatitis C virus. J.Virol. (2010)

Release Date

2010-05-26

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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