- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.16 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 9 x UNL: UNKNOWN LIGAND
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.4: 23 residues within 4Å:- Chain C: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, V.67, R.81, H.84, A.88, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, F.180, H.183, F.184, P.187, Y.274
20 PLIP interactions:20 interactions with chain C,- Hydrophobic interactions: C:Q.45, C:L.50, C:L.52, C:L.52, C:A.53, C:Y.56, C:V.67, C:A.88, C:L.124, C:T.127, C:L.134, C:L.134, C:F.180, C:F.184
- Salt bridges: C:R.81, C:R.81
- pi-Stacking: C:H.183, C:H.183
- Metal complexes: C:H.84, C:H.183
HEM.5: 23 residues within 4Å:- Chain C: W.32, G.35, S.36, L.38, A.39, H.98, I.99, R.101, S.107, T.113, W.114, G.117, V.118, L.120, L.121, I.190, T.194, H.197, L.198, L.201, S.206, N.207
- Ligands: UQ.6
21 PLIP interactions:21 interactions with chain C,- Hydrophobic interactions: C:L.38, C:L.38, C:T.113, C:V.118, C:L.120, C:L.121, C:I.190, C:L.198, C:L.201, C:L.201
- Hydrogen bonds: C:W.32, C:G.35, C:N.207
- Water bridges: C:W.32, C:R.101, C:S.206
- Salt bridges: C:H.98, C:R.101, C:R.101
- Metal complexes: C:H.98, C:H.197
HEM.23: 23 residues within 4Å:- Chain M: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, V.67, R.81, H.84, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, F.180, H.183, F.184, P.187, I.190, Y.274
20 PLIP interactions:20 interactions with chain M,- Hydrophobic interactions: M:Q.45, M:I.46, M:L.50, M:L.52, M:L.52, M:A.53, M:Y.56, M:V.67, M:L.124, M:L.134, M:L.134, M:F.180, M:F.184, M:I.190
- Salt bridges: M:R.81, M:R.81
- pi-Stacking: M:H.183, M:H.183
- Metal complexes: M:H.84, M:H.183
HEM.24: 24 residues within 4Å:- Chain M: W.32, G.35, S.36, L.38, A.39, I.95, H.98, I.99, R.101, S.107, T.113, W.114, G.117, V.118, L.120, L.121, I.190, T.194, H.197, L.198, L.201, S.206, N.207
- Ligands: UQ.27
26 PLIP interactions:26 interactions with chain M,- Hydrophobic interactions: M:L.38, M:L.38, M:I.95, M:I.99, M:T.113, M:W.114, M:V.118, M:L.120, M:L.121, M:I.190, M:L.198, M:L.201, M:L.201
- Hydrogen bonds: M:W.32, M:G.35, M:N.207
- Water bridges: M:W.32, M:S.36, M:S.206
- Salt bridges: M:H.98, M:R.101, M:R.101
- pi-Stacking: M:H.98, M:H.197
- Metal complexes: M:H.98, M:H.197
- 2 x UQ: Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer(Non-covalent)
UQ.6: 12 residues within 4Å:- Chain C: S.18, L.22, I.28, S.36, A.39, L.198, L.201, H.202, S.206, F.221, D.229
- Ligands: HEM.5
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:A.39, C:L.198
- Hydrogen bonds: C:S.206
- pi-Stacking: C:F.221
UQ.27: 12 residues within 4Å:- Chain M: S.18, L.22, I.28, S.36, A.39, L.198, L.201, H.202, S.206, F.221, D.229
- Ligands: HEM.24
5 PLIP interactions:5 interactions with chain M- Hydrophobic interactions: M:A.39, M:L.198, M:F.221, M:F.221
- Hydrogen bonds: M:S.206
- 4 x CDL: CARDIOLIPIN(Non-covalent)
CDL.7: 10 residues within 4Å:- Chain C: S.29, A.30, W.31, Y.105
- Chain F: H.72
- Chain G: R.40, F.41, Q.44
- Ligands: PEE.8, CDL.14
7 PLIP interactions:2 interactions with chain C, 4 interactions with chain G, 1 interactions with chain F- Hydrophobic interactions: C:W.31, G:F.41
- Hydrogen bonds: C:A.30
- Salt bridges: G:R.40, G:R.40, G:R.40, F:H.72
CDL.14: 14 residues within 4Å:- Chain C: A.30, N.33, G.232, L.235
- Chain D: Y.220, K.223, R.224
- Chain F: H.72, R.73
- Chain G: I.29, A.33, L.34, R.40
- Ligands: CDL.7
11 PLIP interactions:5 interactions with chain D, 4 interactions with chain C, 1 interactions with chain F, 1 interactions with chain G- Hydrophobic interactions: D:Y.220, C:A.30
- Hydrogen bonds: D:R.224, C:N.33, G:R.40
- Salt bridges: D:K.223, D:R.224, D:K.231, C:K.228, C:K.228, F:R.73
CDL.28: 10 residues within 4Å:- Chain M: S.29, A.30, W.31, Y.105
- Chain P: H.72
- Chain Q: R.40, F.41, Q.44
- Ligands: PEE.29, CDL.32
9 PLIP interactions:1 interactions with chain P, 4 interactions with chain M, 4 interactions with chain Q- Salt bridges: P:H.72, Q:R.40, Q:R.40, Q:R.40
- Hydrophobic interactions: M:W.31, Q:Q.44
- Hydrogen bonds: M:A.30, M:W.31, M:Y.105
CDL.32: 16 residues within 4Å:- Chain M: A.30, N.33, L.231, G.232, L.235
- Chain N: Y.220, K.223, R.224, K.231
- Chain P: H.72, R.73
- Chain Q: I.26, A.33, L.34, R.40
- Ligands: CDL.28
15 PLIP interactions:8 interactions with chain N, 4 interactions with chain M, 2 interactions with chain Q, 1 interactions with chain P- Hydrophobic interactions: N:Y.220, N:Y.220, M:A.30, Q:I.26
- Hydrogen bonds: N:Y.220, N:R.224, M:N.33, Q:R.40
- Salt bridges: N:K.223, N:R.224, N:K.231, N:K.231, M:K.228, M:K.228, P:R.73
- 6 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.8: 16 residues within 4Å:- Chain C: W.31, F.96, L.97, Y.104, Y.105, T.317, F.326, W.327, V.330, L.333, T.337
- Chain F: Y.29, H.72
- Chain G: Q.44, V.48
- Ligands: CDL.7
18 PLIP interactions:16 interactions with chain C, 1 interactions with chain G, 1 interactions with chain F- Hydrophobic interactions: C:W.31, C:W.31, C:W.31, C:F.96, C:Y.104, C:Y.104, C:Y.105, C:F.326, C:F.326, C:W.327, C:W.327, C:V.330, C:L.333
- Hydrogen bonds: C:Y.104, C:Y.104, C:Y.105, G:R.40, F:H.72
PEE.9: 4 residues within 4Å:- Chain A: Y.442
- Chain C: H.222, I.230
- Ligands: PEE.18
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.230
- Salt bridges: C:H.222, C:H.222
PEE.18: 19 residues within 4Å:- Chain A: Y.442
- Chain C: F.227, I.230
- Chain D: L.215, L.219, M.222, K.226
- Chain E: Y.37, T.40, C.44, T.47, A.48
- Chain J: F.11, V.21, V.22, A.25, V.26, E.29
- Ligands: PEE.9
12 PLIP interactions:4 interactions with chain D, 4 interactions with chain J, 2 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: D:L.215, D:L.219, D:L.219, J:V.21, J:V.22, J:A.25, E:T.47, E:A.48, C:I.230
- Salt bridges: D:K.226
- Hydrogen bonds: J:F.11, A:Y.442
PEE.21: 2 residues within 4Å:- Chain K: Y.442
- Chain M: H.222
2 PLIP interactions:1 interactions with chain K, 1 interactions with chain M- Hydrogen bonds: K:Y.442
- Salt bridges: M:H.222
PEE.29: 15 residues within 4Å:- Chain M: W.31, F.96, L.97, Y.104, Y.105, T.317, F.326, W.327, V.330, L.333, T.337
- Chain P: Y.29
- Chain Q: Q.44, V.48
- Ligands: CDL.28
16 PLIP interactions:15 interactions with chain M, 1 interactions with chain P- Hydrophobic interactions: M:W.31, M:W.31, M:W.31, M:F.96, M:F.96, M:L.97, M:Y.104, M:Y.104, M:Y.105, M:F.326, M:F.326, M:W.327, M:V.330, M:L.333
- Hydrogen bonds: M:Y.104, P:H.72
PEE.36: 15 residues within 4Å:- Chain K: Y.442
- Chain M: F.227, I.230
- Chain N: L.219, M.222
- Chain O: Y.37, T.40, C.44, T.47, A.48
- Chain T: F.11, V.21, V.22, A.25, E.29
10 PLIP interactions:2 interactions with chain N, 3 interactions with chain O, 4 interactions with chain T, 1 interactions with chain M- Hydrophobic interactions: N:L.219, O:T.47, O:A.48, T:V.21, T:V.22, T:A.25, M:I.230
- Salt bridges: N:K.226
- Hydrogen bonds: O:T.40, T:F.11
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 7 residues within 4Å:- Chain C: F.64, V.67, A.68, R.81, P.135, N.256, F.257
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.81, C:R.81, C:N.256, C:N.256
GOL.30: 6 residues within 4Å:- Chain M: F.64, A.68, R.81, N.256, F.257
- Chain N: Y.115
4 PLIP interactions:3 interactions with chain M, 1 interactions with chain N- Hydrogen bonds: M:R.81, M:R.81, M:N.256, N:Y.115
- 2 x HEC: HEME C(Covalent)
HEC.13: 17 residues within 4Å:- Chain D: V.36, C.37, C.40, H.41, N.105, A.108, P.110, P.111, I.116, R.120, Y.126, F.153, I.158, G.159, M.160, P.163, I.164
11 PLIP interactions:11 interactions with chain D,- Hydrophobic interactions: D:A.108, D:I.116, D:I.158, D:M.160, D:P.163, D:I.164
- Hydrogen bonds: D:G.159
- Salt bridges: D:R.120
- pi-Stacking: D:H.41
- pi-Cation interactions: D:H.41
- Metal complexes: D:H.41
HEC.31: 17 residues within 4Å:- Chain N: V.36, C.37, C.40, H.41, N.105, A.108, P.110, P.111, I.116, R.120, Y.126, F.153, I.158, G.159, M.160, P.163, I.164
13 PLIP interactions:13 interactions with chain N,- Hydrophobic interactions: N:A.108, N:I.116, N:I.158, N:M.160, N:P.163, N:I.164
- Hydrogen bonds: N:Y.126, N:G.159
- Salt bridges: N:R.120
- pi-Stacking: N:H.41, N:H.41
- pi-Cation interactions: N:H.41
- Metal complexes: N:H.41
- 5 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.15: 12 residues within 4Å:- Chain C: Y.76
- Chain D: Q.200, R.203, M.204, K.207, I.211
- Chain E: Y.49, A.50, N.53, Q.57
- Chain J: D.37
- Ligands: BOG.16
9 PLIP interactions:4 interactions with chain D, 2 interactions with chain E, 2 interactions with chain C, 1 interactions with chain J- Hydrophobic interactions: D:K.207, D:I.211, E:Y.49
- Hydrogen bonds: D:Q.200, E:N.53, C:Y.76, C:Y.76, J:D.37
- Salt bridges: D:K.207
BOG.16: 4 residues within 4Å:- Chain D: D.199, Q.200, R.203
- Ligands: BOG.15
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.200, D:R.203, D:R.203
- Salt bridges: D:R.203
BOG.25: 4 residues within 4Å:- Chain M: M.14, L.198, T.199, H.202
2 PLIP interactions:2 interactions with chain M- Hydrogen bonds: M:L.198
- Salt bridges: M:H.202
BOG.33: 9 residues within 4Å:- Chain M: L.241
- Chain N: R.203, M.204, K.207, M.208
- Chain O: Y.49, A.50, N.53, Q.57
6 PLIP interactions:3 interactions with chain N, 2 interactions with chain O, 1 interactions with chain M- Hydrophobic interactions: N:K.207, O:Y.49, M:L.241
- Hydrogen bonds: N:Q.200, O:N.53
- Salt bridges: N:K.207
BOG.34: 1 residues within 4Å:- Chain N: Q.200
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:Q.200
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.17: 9 residues within 4Å:- Chain E: C.139, H.141, L.142, C.144, C.158, C.160, H.161, G.162, S.163
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.139, E:H.141, E:C.158, E:H.161
FES.35: 8 residues within 4Å:- Chain O: C.139, H.141, L.142, C.144, C.158, H.161, G.162, S.163
4 PLIP interactions:4 interactions with chain O,- Metal complexes: O:C.139, O:H.141, O:C.158, O:H.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron Transfer by Domain Movement in Cytochrome Bc1. Nature (1998)
- Release Date
- 2009-04-28
- Peptides
- UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL: AK
UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, MITOCHONDRIAL: BL
Cytochrome b: CM
CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN: FP
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: GQ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
NB
BL
OC
CM
PD
DN
QE
EO
RF
FP
SG
GQ
TH
HR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.16 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 9 x UNL: UNKNOWN LIGAND
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x UQ: Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer(Non-covalent)
- 4 x CDL: CARDIOLIPIN(Non-covalent)
- 6 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x HEC: HEME C(Covalent)
- 5 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Electron Transfer by Domain Movement in Cytochrome Bc1. Nature (1998)
- Release Date
- 2009-04-28
- Peptides
- UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I, MITOCHONDRIAL: AK
UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2, MITOCHONDRIAL: BL
Cytochrome b: CM
CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN: FP
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: GQ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AK
NB
BL
OC
CM
PD
DN
QE
EO
RF
FP
SG
GQ
TH
HR
UI
IS
VJ
JT
W - Membrane
-
We predict this structure to be a membrane protein.