- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x OXM: OXAMIC ACID(Non-covalent)
OXM.2: 7 residues within 4Å:- Chain A: N.137, L.164, R.168, H.192, A.237, T.247
- Ligands: NAI.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.137
- Salt bridges: A:R.168
OXM.9: 8 residues within 4Å:- Chain B: Q.99, R.105, N.137, R.168, H.192, A.237, T.247
- Ligands: NAI.8
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:Q.99, B:R.105, B:N.137, B:T.247, B:T.247
- Water bridges: B:A.237, B:T.247
- Salt bridges: B:R.105, B:R.168, B:H.192
OXM.13: 9 residues within 4Å:- Chain C: Q.99, R.105, N.137, L.164, R.168, H.192, A.237, T.247
- Ligands: NAI.12
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:R.105, C:N.137, C:T.247, C:T.247, C:T.247
- Water bridges: C:T.247
- Salt bridges: C:R.105, C:R.168, C:H.192
OXM.18: 6 residues within 4Å:- Chain D: N.137, R.168, H.192, A.237, T.247
- Ligands: NAI.17
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.137, D:T.247
- Water bridges: D:T.247
- Salt bridges: D:R.168, D:H.192
- 14 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 4 residues within 4Å:- Chain A: L.182, S.183, H.185
- Chain C: R.170
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Water bridges: C:R.268
- Salt bridges: C:R.170, C:H.185, A:H.185
- Hydrogen bonds: A:L.182
ACT.4: 3 residues within 4Å:- Chain A: D.42, F.70, R.72
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.42
ACT.5: 2 residues within 4Å:- Chain A: R.267
- Chain C: G.178
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.267
ACT.6: 3 residues within 4Å:- Chain A: I.241, K.242, G.245
No protein-ligand interaction detected (PLIP)ACT.7: 4 residues within 4Å:- Chain A: K.41, D.42
- Chain D: D.42
- Ligands: ACT.22
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:D.42, D:D.42
ACT.10: 5 residues within 4Å:- Chain B: M.40, D.42, F.70, L.71, R.72
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.72
ACT.11: 1 residues within 4Å:- Chain B: H.16
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:H.16
- Salt bridges: B:H.16
ACT.14: 5 residues within 4Å:- Chain C: M.40, D.42, F.70, L.71, R.72
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.72
ACT.15: 6 residues within 4Å:- Chain C: L.213, H.214, P.215, E.216, K.223
- Chain D: Q.6
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:Q.6, C:E.216
- Hydrophobic interactions: C:P.215
- Salt bridges: C:H.214, C:K.223
ACT.16: 3 residues within 4Å:- Chain C: L.329, Q.330, F.331
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.331
ACT.19: 3 residues within 4Å:- Chain D: Y.280, K.304, V.305
1 PLIP interactions:1 interactions with chain D- Water bridges: D:Y.280
ACT.20: 3 residues within 4Å:- Chain D: M.40, D.42, F.70
No protein-ligand interaction detected (PLIP)ACT.21: 1 residues within 4Å:- Chain D: K.4
2 PLIP interactions:2 interactions with chain D- Water bridges: D:K.4
- Salt bridges: D:K.4
ACT.22: 5 residues within 4Å:- Chain D: K.41, L.43, E.260, K.264
- Ligands: ACT.7
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.41
- Salt bridges: D:K.41, D:K.264
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swiderek, K. et al., Modeling of isotope effects on binding oxamate to lactic dehydrogenase. J.Phys.Chem.B (2009)
- Release Date
- 2009-09-15
- Peptides
- L-lactate dehydrogenase A chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x OXM: OXAMIC ACID(Non-covalent)
- 14 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swiderek, K. et al., Modeling of isotope effects on binding oxamate to lactic dehydrogenase. J.Phys.Chem.B (2009)
- Release Date
- 2009-09-15
- Peptides
- L-lactate dehydrogenase A chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H