SMTL ID : 4i9u.2 (1 other biounit)

Crystal structure of rabbit LDHA in complex with a fragment inhibitor AP26256

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x 1E7: 6-({2-[(5-chloro-2-methoxyphenyl)amino]-2-oxoethyl}sulfanyl)pyridine-3-carboxylic acid(Non-covalent)

1E7.1: 13 residues within 4Å: Chain A: V.25, G.26, V.50, D.51, V.52, A.95, G.96, R.98, R.111, N.114, I.115, F.118, I.119 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.52, A:N.114, A:I.115, A:I.119 Salt bridges: A:R.98, A:R.111 Halogen bonds: A:V.50 1E7.2: 13 residues within 4Å: Chain B: V.25, G.26, V.50, D.51, V.52, A.95, G.96, A.97, R.98, R.111, I.115, F.118, I.119 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.52, B:A.95, B:I.115 Salt bridges: B:R.98, B:R.111 Halogen bonds: B:V.50 1E7.3: 12 residues within 4Å: Chain C: V.25, G.26, V.50, D.51, V.52, A.95, G.96, R.111, N.114, I.115, F.118, I.119 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.52, C:A.95, C:I.115, C:I.119 Salt bridges: C:R.111 Halogen bonds: C:V.50 1E7.4: 11 residues within 4Å: Chain D: V.25, G.26, V.50, D.51, V.52, A.95, G.96, R.111, I.115, F.118, I.119 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.52, D:A.95, D:I.115, D:I.119 Water bridges: D:Y.82 Salt bridges: D:R.111 Halogen bonds: D:V.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohlmann, A. et al., Fragment growing and linking lead to novel nanomolar lactate dehydrogenase inhibitors. J.Med.Chem. (2013)

Release Date

2013-01-23

Peptides

L-lactate dehydrogenase A chain: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

L-lactate dehydrogenase A chain

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