- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.2: 9 residues within 4Å:- Chain A: F.357, K.373, W.377, F.381, V.406, L.407, L.411
- Ligands: SO4.8, LMT.13
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.357, A:V.406, A:L.407, A:L.411
- Salt bridges: A:K.373
LMT.13: 8 residues within 4Å:- Chain A: F.381, A.384
- Chain B: K.373, W.377, F.381, V.406
- Ligands: LMT.2, SO4.18
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:F.381, B:V.406, A:F.381, A:A.384
- Hydrogen bonds: B:K.373
- 2 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 2 x PS9: OCTATHIOCANE(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.5: 7 residues within 4Å:- Chain A: H.168, Y.169, K.172, R.213, E.353, D.354, K.376
6 PLIP interactions:6 interactions with chain A- Water bridges: A:H.168, A:K.172
- Salt bridges: A:H.168, A:K.172, A:R.213, A:D.354
MES.16: 8 residues within 4Å:- Chain B: H.168, Y.169, K.172, R.213, E.353, D.354, K.376
- Ligands: SO4.11
8 PLIP interactions:8 interactions with chain B- Water bridges: B:R.213, B:R.213, B:D.354
- Salt bridges: B:H.168, B:K.172, B:R.213, B:E.353, B:D.354
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: W.391, R.394, N.395
- Chain B: S.401
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.395, A:N.395, B:S.401
- Salt bridges: A:R.394
SO4.7: 6 residues within 4Å:- Chain A: K.77, K.108, P.257, E.258, V.259
- Ligands: FAD.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.258, A:V.259
- Salt bridges: A:K.77, A:K.108
SO4.8: 4 residues within 4Å:- Chain A: G.375, K.376, W.377
- Ligands: LMT.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.376, A:W.377, A:W.377
- Salt bridges: A:K.376
SO4.9: 4 residues within 4Å:- Chain A: S.401
- Chain B: W.391, R.394, N.395
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.401, A:S.401
SO4.10: 2 residues within 4Å:- Chain A: R.369, K.412
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.369, A:K.412
SO4.11: 2 residues within 4Å:- Chain B: K.172
- Ligands: MES.16
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.172
SO4.17: 6 residues within 4Å:- Chain B: K.77, K.108, P.257, E.258, V.259
- Ligands: FAD.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.258, B:V.259
- Salt bridges: B:K.77, B:K.108
SO4.18: 4 residues within 4Å:- Chain B: G.375, K.376, W.377
- Ligands: LMT.13
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.376, B:W.377
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marcia, M. et al., The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-07-14
- Peptides
- Sulfide-quinone reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 2 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 2 x PS9: OCTATHIOCANE(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marcia, M. et al., The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-07-14
- Peptides
- Sulfide-quinone reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F