- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.2: 8 residues within 4Å:- Chain A: F.357, K.373, W.377, F.381, V.406, L.407
- Ligands: SO4.9, LMT.11
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.357, A:L.407
- Salt bridges: A:K.373
LMT.11: 7 residues within 4Å:- Chain A: F.381
- Chain B: K.373, W.377, F.381, F.410
- Ligands: LMT.2, SO4.18
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.410, A:F.381
- Hydrogen bonds: B:K.373
- Salt bridges: B:K.373
- 2 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 3 x PS9: OCTATHIOCANE(Non-covalent)
PS9.4: 6 residues within 4Å:- Chain A: C.156, G.158, P.159, C.347, I.348, A.349
No protein-ligand interaction detected (PLIP)PS9.13: 5 residues within 4Å:- Chain B: C.156, F.157, G.158, P.311
- Ligands: PS9.14
No protein-ligand interaction detected (PLIP)PS9.14: 4 residues within 4Å:- Chain B: G.158, C.347, F.358
- Ligands: PS9.13
No protein-ligand interaction detected (PLIP)- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.5: 7 residues within 4Å:- Chain A: H.168, Y.169, K.172, R.213, E.353, D.354, K.376
7 PLIP interactions:7 interactions with chain A- Water bridges: A:R.213, A:R.213
- Salt bridges: A:H.168, A:K.172, A:R.213, A:E.353, A:D.354
MES.15: 7 residues within 4Å:- Chain B: H.168, Y.169, K.172, R.213, E.353, D.354, K.376
6 PLIP interactions:6 interactions with chain B- Water bridges: B:R.213
- Salt bridges: B:H.168, B:K.172, B:R.213, B:E.353, B:D.354
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 1 residues within 4Å:- Chain A: R.369
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.369
SO4.7: 4 residues within 4Å:- Chain A: W.391, R.394, N.395
- Chain B: S.401
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.401, A:N.395
- Salt bridges: A:R.394
SO4.8: 6 residues within 4Å:- Chain A: K.77, K.108, P.257, E.258, V.259
- Ligands: FAD.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.258, A:V.259
- Water bridges: A:K.77
- Salt bridges: A:K.77, A:K.108
SO4.9: 4 residues within 4Å:- Chain A: G.375, K.376, W.377
- Ligands: LMT.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.376, A:W.377
SO4.16: 4 residues within 4Å:- Chain A: S.401
- Chain B: W.391, R.394, N.395
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.401, A:S.401, B:N.395
- Salt bridges: B:R.394
SO4.17: 6 residues within 4Å:- Chain B: K.77, K.108, P.257, E.258, V.259
- Ligands: FAD.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.258, B:V.259
- Salt bridges: B:K.77, B:K.108
SO4.18: 4 residues within 4Å:- Chain B: G.375, K.376, W.377
- Ligands: LMT.11
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.376, B:W.377
- Salt bridges: B:K.376
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marcia, M. et al., The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-07-14
- Peptides
- Sulfide-quinone reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 2 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 3 x PS9: OCTATHIOCANE(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marcia, M. et al., The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-07-14
- Peptides
- Sulfide-quinone reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D