SMTL ID : 3iu2.1 (1 other biounit)

Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90096

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 31 residues within 4Å: Chain A: Y.4, Q.5, F.6, W.7, N.66, Y.67, V.68, I.132, N.133, F.134, L.135, C.136, V.137, R.142, S.143, K.144, R.145, V.146, A.147, P.148, T.155, V.158, H.159, I.163, F.164, Q.165, A.166, Y.168, T.169, L.174, Y.366 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.67, A:V.68, A:I.132, A:L.135, A:L.135, A:V.137, A:V.158, A:A.166, A:Y.168, A:Y.168, A:Y.366 Hydrogen bonds: A:Q.5, A:F.6, A:W.7, A:Y.67, A:F.134, A:L.135, A:L.135, A:V.137, A:R.142, A:R.142, A:S.143, A:R.145, A:V.146, A:A.147 Water bridges: A:K.144, A:K.144, A:R.145 Salt bridges: A:R.145, A:R.145

1 x 096: (2R)-2-{4-hydroxy-5-methoxy-2-[3-(4-methylpiperazin-1-yl)propyl]phenyl}-3-pyridin-3-yl-1,3-thiazolidin-4-one(Non-covalent)

096.2: 16 residues within 4Å: Chain A: V.68, E.69, D.70, D.71, F.75, R.76, F.77, G.171, Y.183, H.185, F.198, S.292, Y.307, N.338, G.357, D.358 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.70, A:F.75, A:Y.183, A:Y.183, A:F.198 Hydrogen bonds: A:S.292, A:N.338, A:D.358 Water bridges: A:D.71, A:H.185, A:Y.307 Salt bridges: A:D.71, A:D.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90096. To be Published

Release Date

2009-09-15

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase 1

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