SMTL ID : 3jtk.1 (1 other biounit)

Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 33 residues within 4Å: Chain A: Y.4, Q.5, F.6, W.7, N.66, Y.67, V.68, I.132, N.133, F.134, L.135, C.136, V.137, R.142, S.143, K.144, R.145, V.146, A.147, P.148, T.155, V.158, H.159, I.163, F.164, Q.165, A.166, Y.168, T.169, A.170, V.172, L.174, Y.366 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:W.7, A:W.7, A:Y.67, A:V.68, A:I.132, A:I.132, A:L.135, A:L.135, A:V.137, A:V.158, A:A.166, A:Y.168, A:Y.168, A:Y.168, A:Y.168, A:Y.366 Hydrogen bonds: A:Q.5, A:F.6, A:W.7, A:Y.67, A:F.134, A:L.135, A:L.135, A:V.137, A:R.142, A:R.142, A:S.143, A:R.145, A:V.146, A:A.147 Water bridges: A:S.143, A:K.144, A:K.144, A:R.145 Salt bridges: A:R.145, A:R.145

1 x X55: (2R)-3-benzyl-2-(2-bromo-4-hydroxy-5-methoxyphenyl)-1,3-thiazolidin-4-one(Non-covalent)

X55.2: 15 residues within 4Å: Chain A: V.68, E.69, D.70, F.75, R.76, F.77, Y.183, H.185, F.198, S.292, L.303, Y.307, N.338, G.357, D.358 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.70, A:F.75, A:F.198, A:F.198, A:F.198, A:L.303 Hydrogen bonds: A:H.185, A:S.292, A:D.358 pi-Stacking: A:F.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90055. To be Published

Release Date

2009-09-22

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase 1

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