SMTL ID : 3iwe.2 (1 other biounit)

Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD85646

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 34 residues within 4Å: Chain A: Y.4, Q.5, F.6, W.7, N.66, Y.67, V.68, I.132, N.133, F.134, L.135, C.136, V.137, R.142, S.143, K.144, R.145, V.146, A.147, P.148, I.151, T.155, V.158, H.159, I.163, F.164, Q.165, A.166, Y.168, T.169, A.170, L.174, Y.366 Ligands: 646.2 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:W.7, A:W.7, A:Y.67, A:V.68, A:I.132, A:I.132, A:L.135, A:L.135, A:L.135, A:V.137, A:I.151, A:I.151, A:T.155, A:V.158, A:A.166, A:Y.168, A:Y.366 Hydrogen bonds: A:Q.5, A:F.6, A:W.7, A:L.135, A:L.135, A:V.137, A:R.142, A:R.142, A:S.143, A:R.145, A:V.146, A:A.147 Water bridges: A:R.142, A:R.142, A:R.142, A:S.143, A:K.144, A:K.144, A:G.171 Salt bridges: A:R.145, A:R.145

1 x 646: 2,6-dichloro-4-(2-piperazin-1-ylpyridin-4-yl)-N-(1,3,5-trimethyl-1H-pyrazol-4-yl)benzenesulfonamide(Non-covalent)

646.2: 20 residues within 4Å: Chain A: Y.67, V.68, E.69, D.70, F.75, R.76, F.77, N.133, T.169, G.171, Y.183, H.185, F.198, S.292, Y.307, N.338, D.358, L.361, Q.383 Ligands: MYA.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.68, A:D.70, A:F.77, A:Y.183, A:F.198 Hydrogen bonds: A:Y.67, A:N.133, A:G.171, A:S.292 Water bridges: A:N.133, A:D.358 pi-Stacking: A:Y.183 Halogen bonds: A:Y.307, A:D.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD85646. To be Published

Release Date

2009-09-15

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycylpeptide N-tetradecanoyltransferase 1

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