- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x EOH: ETHANOL(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 10 residues within 4Å:- Chain A: M.71, M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145
- Chain B: D.174
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.115, A:R.115, A:K.145, A:K.145
- Water bridges: A:D.112
EDO.4: 4 residues within 4Å:- Chain A: E.128, R.132, H.135, L.280
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.128
- Water bridges: A:H.135, A:D.161, A:R.278
EDO.5: 3 residues within 4Å:- Chain A: P.111, D.112
- Ligands: EOH.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.112, A:D.112
EDO.6: 6 residues within 4Å:- Chain A: P.38, T.39, M.40, Q.72, V.142
- Ligands: FG2.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.72
- Water bridges: A:Q.164
EDO.7: 1 residues within 4Å:- Chain A: T.218
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.218
EDO.10: 9 residues within 4Å:- Chain A: D.174
- Chain B: M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.115, B:K.145, B:K.145
- Water bridges: B:D.112
EDO.11: 5 residues within 4Å:- Chain B: P.38, M.40, Q.72, V.142
- Ligands: FG2.17
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:P.38, B:Q.72, B:Q.72
- Water bridges: B:Q.164
EDO.12: 1 residues within 4Å:- Chain B: P.243
No protein-ligand interaction detected (PLIP)EDO.13: 7 residues within 4Å:- Chain A: L.114, R.115, T.117
- Chain B: Q.119, P.120, G.121
- Ligands: FG2.9
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.119, A:T.117, A:T.117
EDO.14: 5 residues within 4Å:- Chain B: E.128, R.132, H.135, R.198, L.280
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.198
- Water bridges: B:R.278
EDO.15: 5 residues within 4Å:- Chain B: L.123, Q.170, G.256, L.257, G.258
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.170
- Water bridges: B:L.123, B:Q.170, B:G.258, B:G.258
EDO.16: 4 residues within 4Å:- Chain B: Y.162, L.165, V.166, R.169
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.169
- Water bridges: B:G.183
- 3 x FG2: 5-methoxy-N-[(5-methylpyridin-2-yl)sulfonyl]-1H-indole-2-carboxamide(Non-covalent)
FG2.8: 19 residues within 4Å:- Chain A: P.38, T.39, M.40, H.44, G.46, H.47, A.49, L.50, Y.82, G.158, K.160, D.161, Q.164, V.184, P.185, T.186, V.187, M.195
- Ligands: EDO.6
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:K.160
- Hydrogen bonds: A:M.40, A:Q.164, A:V.187
- Water bridges: A:H.44, A:H.47, A:K.160, A:K.160, A:D.161, A:D.161, A:S.196, A:S.197
FG2.9: 9 residues within 4Å:- Chain A: M.71, L.114, T.117, P.133, T.134, A.137, G.138
- Chain B: Q.119
- Ligands: EDO.13
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.114, A:T.117, A:T.134
- Water bridges: A:Q.119, A:Q.119, A:Q.119
- Hydrogen bonds: B:Q.119
FG2.17: 20 residues within 4Å:- Chain B: P.38, T.39, M.40, H.44, G.46, H.47, A.49, L.50, Q.72, H.135, G.158, K.160, D.161, Q.164, V.184, P.185, T.186, V.187, M.195
- Ligands: EDO.11
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:K.160, B:K.160
- Hydrogen bonds: B:M.40, B:V.187
- Water bridges: B:H.44, B:Q.72, B:D.161, B:Q.164, B:Q.164, B:M.195
- pi-Cation interactions: B:H.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, A.W. et al., Application of fragment growing and fragment linking to the discovery of inhibitors of Mycobacterium tuberculosis pantothenate synthetase. Angew.Chem.Int.Ed.Engl. (2009)
- Release Date
- 2009-10-13
- Peptides
- Pantothenate synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x EOH: ETHANOL(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x FG2: 5-methoxy-N-[(5-methylpyridin-2-yl)sulfonyl]-1H-indole-2-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, A.W. et al., Application of fragment growing and fragment linking to the discovery of inhibitors of Mycobacterium tuberculosis pantothenate synthetase. Angew.Chem.Int.Ed.Engl. (2009)
- Release Date
- 2009-10-13
- Peptides
- Pantothenate synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B