SMTL ID : 4ddm.1 (1 other biounit)

Pantothenate synthetase in complex with 2,1,3-benzothiadiazole-5-carboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: M.109, Y.110, P.111, D.112, G.113, L.114, R.115, T.116, K.145 Chain B: D.174 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.110, A:D.112, A:R.115, A:K.145, A:K.145 Water bridges: B:N.176 GOL.2: 2 residues within 4Å: Chain A: P.111, D.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.112, A:D.112 GOL.5: 6 residues within 4Å: Chain A: N.176, D.178 Chain B: A.21, Q.148, I.149, R.151 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.148, B:R.151, A:N.176 Water bridges: A:D.178

3 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 5 residues within 4Å: Chain A: L.114, R.115, T.117 Chain B: Q.119, P.120 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.117, B:Q.119 Hydrogen bonds: A:L.114 EOH.4: 2 residues within 4Å: Chain A: A.215, T.218 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.218 Hydrogen bonds: A:T.218 EOH.9: 6 residues within 4Å: Chain B: G.158, E.159, K.160, V.184, P.185, T.186 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.160 Water bridges: B:V.187, B:V.187

2 x 0HO: 2,1,3-benzothiadiazole-5-carboxylic acid(Non-covalent)

0HO.6: 7 residues within 4Å: Chain A: P.38, T.39, M.40, H.47, V.143, F.157, Q.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.40 Water bridges: A:Q.72, A:Q.72, A:Q.72 Salt bridges: A:H.47 0HO.7: 6 residues within 4Å: Chain B: P.38, T.39, M.40, H.47, F.157, Q.164 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.40, B:Q.164 Water bridges: B:F.67 Salt bridges: B:H.47

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 8 residues within 4Å: Chain A: D.174 Chain B: M.109, Y.110, G.113, L.114, R.115, T.116, K.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.109, B:R.115, B:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvestre, H.L. et al., Integrated biophysical approach to fragment screening and validation for fragment-based lead discovery. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-02-13

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase

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