SMTL ID : 3iuh.1

Co2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: E.219, D.254, H.281, D.327 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.219, A:D.254, A:H.281, A:D.327 CO.2: 4 residues within 4Å: Chain A: D.254, H.257, D.289, D.291 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.257, A:D.289, A:D.289, H2O.7, H2O.13 CO.3: 4 residues within 4Å: Chain B: E.219, D.254, H.281, D.327 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.219, B:D.254, B:H.281, B:D.327, H2O.24 CO.4: 3 residues within 4Å: Chain B: H.257, D.289, D.291 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.257, B:D.289, B:D.289, H2O.17, H2O.19 CO.5: 4 residues within 4Å: Chain C: E.219, D.254, H.281, D.327 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.219, C:E.219, C:D.254, C:H.281, C:D.327 CO.6: 4 residues within 4Å: Chain C: K.221, H.257, D.289, D.291 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.257, C:D.289, H2O.29, H2O.35, H2O.35 CO.7: 4 residues within 4Å: Chain D: E.219, D.254, H.281, D.327 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.219, D:D.254, D:H.281, D:D.327 CO.8: 5 residues within 4Å: Chain D: K.221, D.254, H.257, D.289, D.291 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.257, D:D.289, D:D.289, H2O.39, H2O.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures. Febs J. (2010)

Release Date

2010-02-02

Peptides

L-rhamnose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-rhamnose isomerase

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