SMTL ID : 9nv9.1

NSF Mg2+ class 1 heptamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

7 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 10 residues within 4Å: Chain A: G.222, G.224, G.266, C.267, G.268, K.269, T.270, L.271, H.413, A.442 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.224, A:G.224, A:G.266, A:G.268, A:K.269, A:T.270, A:T.270, A:T.270 Salt bridges: A:K.269 ADP.3: 9 residues within 4Å: Chain B: G.222, G.224, G.266, C.267, G.268, K.269, T.270, I.409, H.413 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.224, B:G.224, B:G.266, B:C.267, B:G.268, B:K.269, B:T.270, B:T.270, B:T.270 Salt bridges: B:K.269 ADP.5: 9 residues within 4Å: Chain C: G.222, G.224, G.266, C.267, G.268, K.269, T.270, I.409, H.413 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.224, C:G.224, C:G.266, C:C.267, C:G.268, C:K.269, C:T.270, C:T.270 Salt bridges: C:K.269 ADP.7: 12 residues within 4Å: Chain D: G.222, I.223, G.224, G.266, C.267, G.268, K.269, T.270, L.271, I.409, H.413, G.441 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.224, D:G.224, D:G.266, D:G.268, D:K.269, D:T.270, D:T.270, D:L.271 Salt bridges: D:K.269 ADP.9: 12 residues within 4Å: Chain E: G.222, I.223, G.224, G.266, C.267, G.268, K.269, T.270, L.271, I.409, H.413, G.441 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:G.224, E:G.224, E:G.266, E:C.267, E:G.268, E:K.269, E:T.270, E:L.271 Salt bridges: E:K.269 ADP.11: 10 residues within 4Å: Chain F: G.222, G.224, G.266, C.267, G.268, K.269, T.270, L.271, I.409, H.413 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:G.224, F:G.224, F:G.266, F:C.267, F:G.268, F:K.269, F:T.270, F:L.271 Salt bridges: F:K.269 ADP.13: 8 residues within 4Å: Chain G: G.222, G.224, G.266, C.267, G.268, K.269, T.270, L.271 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:G.224, G:G.224, G:G.266, G:C.267, G:G.268, G:K.269, G:T.270, G:L.271 Salt bridges: G:K.269

7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 14 residues within 4Å: Chain A: M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, G.551, K.552, T.553, A.554, K.711 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.508, A:I.511, A:I.511, A:H.549, A:G.551, A:K.552, A:T.553, A:T.553, A:A.554 Salt bridges: A:H.549, A:K.552, A:K.552, A:K.711, A:K.711, A:K.711 ATP.4: 15 residues within 4Å: Chain B: M.507, N.508, G.509, I.510, I.511, W.513, V.517, H.549, G.551, K.552, T.553, A.554, L.555, I.710, K.711 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.508, B:N.508, B:I.511, B:I.511, B:H.549, B:S.550, B:G.551, B:K.552, B:T.553, B:T.553, B:A.554 Salt bridges: B:K.552, B:K.552, B:K.711, B:K.711, B:K.711 ATP.6: 14 residues within 4Å: Chain C: M.507, N.508, G.509, I.510, I.511, W.513, V.517, H.549, G.551, K.552, T.553, A.554, I.710, K.711 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:N.508, C:N.508, C:I.511, C:I.511, C:H.549, C:G.551, C:K.552, C:T.553, C:T.553, C:A.554 Salt bridges: C:K.552, C:K.552, C:K.711, C:K.711, C:K.711 ATP.8: 15 residues within 4Å: Chain D: M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, S.550, G.551, K.552, T.553, A.554, K.711 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:N.508, D:N.508, D:I.511, D:I.511, D:H.549, D:S.550, D:G.551, D:K.552, D:T.553, D:T.553, D:A.554 Salt bridges: D:K.552, D:K.552, D:K.711, D:K.711, D:K.711 ATP.10: 14 residues within 4Å: Chain E: M.507, N.508, G.509, I.510, I.511, W.513, V.517, P.548, H.549, G.551, K.552, T.553, A.554, K.711 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:N.508, E:N.508, E:I.511, E:I.511, E:H.549, E:G.551, E:K.552, E:T.553, E:A.554 Salt bridges: E:K.552, E:K.552, E:K.711, E:K.711, E:K.711 ATP.12: 13 residues within 4Å: Chain F: M.507, N.508, G.509, I.510, I.511, W.513, H.549, S.550, G.551, K.552, T.553, A.554, K.711 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:N.508, F:N.508, F:I.511, F:I.511, F:H.549, F:S.550, F:G.551, F:K.552, F:T.553, F:A.554 Salt bridges: F:K.552, F:K.552, F:K.711, F:K.711, F:K.711 ATP.14: 14 residues within 4Å: Chain G: M.507, N.508, G.509, I.510, I.511, W.513, V.517, H.549, S.550, G.551, K.552, T.553, A.554, K.711 15 PLIP interactions: 15 interactions with chain G Hydrogen bonds: G:N.508, G:N.508, G:I.511, G:I.511, G:H.549, G:S.550, G:G.551, G:K.552, G:T.553, G:A.554 Salt bridges: G:K.552, G:K.552, G:K.711, G:K.711, G:K.711

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khan, Y.A. et al., SNARE disassembly requires Sec18/NSF side loading. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-10-01

Peptides

Vesicle-fusing ATPase: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Vesicle-fusing ATPase

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