SMTL ID : 3jqj.2 (1 other biounit)

Crystal structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.49, D.126, K.129 Chain F: L.73, C.74, H.75 11 PLIP interactions: 5 interactions with chain F, 6 interactions with chain A Hydrogen bonds: F:H.75, A:D.126 Water bridges: F:G.108, F:E.112, F:E.112, A:K.49, A:K.129, A:K.129 Salt bridges: F:H.75, A:K.49, A:K.129 PO4.4: 6 residues within 4Å: Chain B: K.49, D.126, K.129 Chain E: L.73, C.74, H.75 10 PLIP interactions: 4 interactions with chain E, 6 interactions with chain B Hydrogen bonds: E:H.75, B:D.126 Water bridges: E:H.75, E:E.112, B:K.49, B:K.129, B:K.129 Salt bridges: E:H.75, B:K.49, B:K.129 PO4.5: 6 residues within 4Å: Chain B: L.73, C.74, H.75 Chain E: K.49, D.126, K.129 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain E Hydrogen bonds: B:H.75 Water bridges: B:H.75, B:H.75, B:E.110, E:K.49, E:K.129 Salt bridges: B:H.75, E:K.49, E:K.129 PO4.7: 6 residues within 4Å: Chain C: K.49, D.126, K.129 Chain D: L.73, C.74, H.75 10 PLIP interactions: 6 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:H.75 Water bridges: D:H.75, D:G.108, D:E.112, D:E.112, C:K.129, C:K.129 Salt bridges: D:H.75, C:K.49, C:K.129 PO4.10: 6 residues within 4Å: Chain C: L.73, C.74, H.75 Chain D: K.49, D.126, K.129 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:H.75, D:D.126 Water bridges: C:H.75, C:E.110, C:E.112, D:K.129 Salt bridges: C:H.75, D:K.49, D:K.129 PO4.15: 6 residues within 4Å: Chain A: L.73, C.74, H.75 Chain F: K.49, D.126, K.129 9 PLIP interactions: 4 interactions with chain F, 5 interactions with chain A Hydrogen bonds: F:D.126, A:H.75 Water bridges: F:K.49, A:G.108, A:E.112, A:E.112 Salt bridges: F:K.49, F:K.129, A:H.75

5 x PGR: R-1,2-PROPANEDIOL(Non-covalent)

PGR.2: 9 residues within 4Å: Chain A: A.64, K.65, K.66, T.67, A.68, H.75, P.76, L.77, E.112 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.64, A:A.68, A:L.77, A:E.112 Water bridges: A:D.69 PGR.8: 9 residues within 4Å: Chain C: A.64, K.65, K.66, T.67, A.68, P.76, L.77, L.79, E.112 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.79 Hydrogen bonds: C:A.68, C:L.77 Water bridges: C:D.69 PGR.12: 11 residues within 4Å: Chain D: P.76 Chain E: A.64, K.65, K.66, T.67, A.68, H.75, P.76, L.77, L.79, E.112 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:L.79, D:P.76 Hydrogen bonds: E:A.68, E:H.75, E:L.77 Water bridges: E:D.69 PGR.13: 6 residues within 4Å: Chain E: T.27, E.83, R.85, E.98, A.99, T.100 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:R.85 Hydrogen bonds: E:E.98, E:T.100, E:T.100 PGR.16: 9 residues within 4Å: Chain F: A.64, K.65, K.66, T.67, A.68, H.75, P.76, L.77, E.112 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:A.68, F:L.77, F:E.112, F:E.112

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: R.24, G.108, K.145, G.148, K.149, S.150 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.24, A:R.24, A:G.108, A:K.145, A:K.145, A:K.149, A:S.150 GOL.6: 5 residues within 4Å: Chain B: R.24, G.148, K.149, S.150 Chain E: K.133 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain E Hydrogen bonds: B:R.24, B:R.24, B:G.148, B:K.149, B:S.150, B:S.150, E:K.133, E:K.133 Water bridges: B:K.145 GOL.9: 7 residues within 4Å: Chain C: R.24, E.110, K.145, G.147, G.148, K.149, S.150 11 PLIP interactions: 2 interactions with chain D, 9 interactions with chain C Water bridges: D:K.133, D:K.133, C:R.24, C:G.108, C:S.150 Hydrogen bonds: C:R.24, C:E.110, C:K.145, C:K.145, C:K.149, C:S.150 GOL.11: 5 residues within 4Å: Chain D: K.19, R.24, G.108, G.148, K.149 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.24, D:R.24, D:G.108, D:K.149 Water bridges: D:E.110, D:K.145 GOL.14: 6 residues within 4Å: Chain E: R.24, G.108, K.145, G.148, K.149, S.150 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:R.24, E:R.24, E:G.108, E:K.145, E:K.149, E:S.150 Water bridges: E:K.145 GOL.17: 7 residues within 4Å: Chain F: R.24, G.108, K.145, G.147, G.148, K.149, S.150 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:R.24, F:R.24, F:G.108, F:K.145, F:K.149, F:S.150, F:S.150 Water bridges: F:E.106, A:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanaujia, S.P. et al., Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-06-30

Peptides

Molybdenum cofactor biosynthesis protein C: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

Molybdenum cofactor biosynthesis protein C

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