SMTL ID : 3jqk.1

Crystal structure of the molybdenum cofactor biosynthesis protein C (TTHA1789) from Thermus Theromophilus HB8 (H32 FORM)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.49, D.126, K.129 Chain E: C.74, H.75, M.111 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain E Hydrogen bonds: A:D.126, E:H.75 Water bridges: A:K.129, E:H.75, E:H.75, E:G.108, E:E.110 Salt bridges: A:K.49, A:K.129, E:H.75 PO4.4: 6 residues within 4Å: Chain B: K.49, D.126, K.129 Chain D: C.74, H.75, M.111 10 PLIP interactions: 6 interactions with chain D, 4 interactions with chain B Hydrogen bonds: D:H.75, B:D.126 Water bridges: D:H.75, D:H.75, D:G.108, D:E.110, B:K.129 Salt bridges: D:H.75, B:K.49, B:K.129 PO4.7: 6 residues within 4Å: Chain C: K.49, D.126, K.129 Chain F: C.74, H.75, M.111 10 PLIP interactions: 4 interactions with chain C, 6 interactions with chain F Hydrogen bonds: C:D.126, F:H.75 Water bridges: C:K.129, F:H.75, F:H.75, F:G.108, F:E.110 Salt bridges: C:K.49, C:K.129, F:H.75 PO4.10: 6 residues within 4Å: Chain B: C.74, H.75, M.111 Chain D: K.49, D.126, K.129 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:H.75, D:D.126 Water bridges: B:H.75, B:H.75, B:G.108, D:K.129 Salt bridges: B:H.75, D:K.49, D:K.129 PO4.13: 6 residues within 4Å: Chain A: C.74, H.75, M.111 Chain E: K.49, D.126, K.129 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain E Hydrogen bonds: A:H.75, E:D.126 Water bridges: A:H.75, A:H.75, A:G.108, E:K.129 Salt bridges: A:H.75, E:K.49, E:K.129 PO4.16: 6 residues within 4Å: Chain C: C.74, H.75, M.111 Chain F: K.49, D.126, K.129 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain F Hydrogen bonds: C:H.75, F:D.126 Water bridges: C:H.75, C:H.75, C:G.108, F:K.129 Salt bridges: C:H.75, F:K.49, F:K.129

12 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: R.24, G.108, E.110, K.145, G.147, S.150 Chain E: K.133 Ligands: ACT.3 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:S.150 Water bridges: A:R.24 Salt bridges: A:K.145, E:K.133 ACT.3: 6 residues within 4Å: Chain A: K.19, R.24, E.106, G.148, K.149 Ligands: ACT.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.149 Hydrogen bonds: A:K.149 Salt bridges: A:K.19, A:R.24 ACT.5: 8 residues within 4Å: Chain B: R.24, G.108, E.110, K.145, G.147, S.150 Chain D: K.133 Ligands: ACT.6 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:S.150 Water bridges: B:R.24 Salt bridges: B:K.145, D:K.133 ACT.6: 6 residues within 4Å: Chain B: K.19, R.24, E.106, G.148, K.149 Ligands: ACT.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.149 Hydrogen bonds: B:K.149 Salt bridges: B:K.19, B:R.24 ACT.8: 8 residues within 4Å: Chain C: R.24, G.108, E.110, K.145, G.147, S.150 Chain F: K.133 Ligands: ACT.9 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:S.150 Water bridges: C:R.24 Salt bridges: C:K.145, F:K.133 ACT.9: 6 residues within 4Å: Chain C: K.19, R.24, E.106, G.148, K.149 Ligands: ACT.8 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:K.149 Hydrogen bonds: C:K.149 Salt bridges: C:K.19, C:R.24 ACT.11: 8 residues within 4Å: Chain B: K.133 Chain D: R.24, G.108, E.110, K.145, G.147, S.150 Ligands: ACT.12 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:S.150 Water bridges: D:R.24 Salt bridges: D:K.145, B:K.133 ACT.12: 6 residues within 4Å: Chain D: K.19, R.24, E.106, G.148, K.149 Ligands: ACT.11 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:K.149 Hydrogen bonds: D:K.149 Salt bridges: D:K.19, D:R.24 ACT.14: 8 residues within 4Å: Chain A: K.133 Chain E: R.24, G.108, E.110, K.145, G.147, S.150 Ligands: ACT.15 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain E Salt bridges: A:K.133, E:K.145 Hydrogen bonds: E:S.150 Water bridges: E:R.24 ACT.15: 6 residues within 4Å: Chain E: K.19, R.24, E.106, G.148, K.149 Ligands: ACT.14 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:K.149 Hydrogen bonds: E:K.149 Salt bridges: E:K.19, E:R.24 ACT.17: 8 residues within 4Å: Chain C: K.133 Chain F: R.24, G.108, E.110, K.145, G.147, S.150 Ligands: ACT.18 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain F Salt bridges: C:K.133, F:K.145 Hydrogen bonds: F:S.150 Water bridges: F:R.24 ACT.18: 6 residues within 4Å: Chain F: K.19, R.24, E.106, G.148, K.149 Ligands: ACT.17 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:K.149 Hydrogen bonds: F:K.149 Salt bridges: F:K.19, F:R.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanaujia, S.P. et al., Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-06-30

Peptides

Molybdenum cofactor biosynthesis protein C: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Molybdenum cofactor biosynthesis protein C

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