SMTL ID : 3kip.2 (2 other biounits)

Crystal structure of type-II 3-dehydroquinase from C. albicans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-12-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.90, A:N.90, A:I.117, A:T.118 Salt bridges: A:H.116 SO4.2: 5 residues within 4Å: Chain B: L.25, N.90, H.116, I.117, T.118 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.90, B:I.117, B:T.118 SO4.4: 4 residues within 4Å: Chain C: N.90, H.116, I.117, T.118 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.90, C:N.90, C:H.116, C:I.117, C:T.118, C:T.118 SO4.5: 5 residues within 4Å: Chain D: N.90, H.116, I.117, T.118, R.123 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.90, D:N.90, D:I.117, D:T.118, D:T.118, D:R.123 SO4.7: 4 residues within 4Å: Chain E: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.90, E:H.116, E:I.117, E:T.118, E:T.118 SO4.8: 4 residues within 4Å: Chain F: N.90, H.116, I.117, T.118 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.90, F:H.116, F:I.117, F:T.118 SO4.9: 4 residues within 4Å: Chain G: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:N.90, G:N.90, G:I.117, G:T.118, G:T.118 SO4.10: 4 residues within 4Å: Chain H: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:N.90, H:H.116, H:I.117, H:T.118, H:T.118 SO4.12: 4 residues within 4Å: Chain I: N.90, H.116, I.117, T.118 6 PLIP interactions: 6 interactions with chain I Hydrogen bonds: I:N.90, I:N.90, I:I.117, I:T.118, I:R.123 Salt bridges: I:H.116 SO4.13: 4 residues within 4Å: Chain J: N.90, H.116, I.117, T.118 6 PLIP interactions: 6 interactions with chain J Hydrogen bonds: J:N.90, J:H.116, J:I.117, J:T.118, J:T.118, J:R.123 SO4.14: 5 residues within 4Å: Chain K: N.90, H.116, I.117, T.118, R.123 5 PLIP interactions: 5 interactions with chain K Hydrogen bonds: K:N.90, K:H.116, K:I.117, K:T.118, K:R.123 SO4.16: 4 residues within 4Å: Chain L: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain L Hydrogen bonds: L:N.90, L:N.90, L:I.117, L:T.118, L:T.118

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 10 residues within 4Å: Chain A: E.69, T.97, S.98 Chain B: E.69, T.97, S.98 Chain C: E.69, Y.94, T.97, S.98 6 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: C:T.97, C:S.98, B:E.69, A:E.69, A:T.97, A:T.97 TRS.6: 10 residues within 4Å: Chain D: E.69, T.97, S.98 Chain E: E.69, Y.94, T.97, S.98 Chain F: E.69, T.97, S.98 7 PLIP interactions: 3 interactions with chain F, 2 interactions with chain E, 2 interactions with chain D Hydrogen bonds: F:E.69, F:T.97, F:S.98, E:T.97, E:T.97, D:T.97 Water bridges: D:V.99 TRS.11: 10 residues within 4Å: Chain G: E.69, Y.94, T.97, S.98 Chain H: E.69, T.97, S.98 Chain I: E.69, T.97, S.98 6 PLIP interactions: 3 interactions with chain H, 2 interactions with chain G, 1 interactions with chain I Hydrogen bonds: H:E.69, H:T.97, H:T.97, G:T.97, I:T.97 Water bridges: G:V.99 TRS.15: 9 residues within 4Å: Chain J: E.69, T.97, S.98 Chain K: E.69, T.97, S.98 Chain L: E.69, T.97, S.98 6 PLIP interactions: 3 interactions with chain J, 1 interactions with chain K, 2 interactions with chain L Hydrogen bonds: J:E.69, J:T.97, K:T.97, L:E.69, L:T.97 Water bridges: J:V.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trapani, S. et al., Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-05-12

Peptides

3-dehydroquinase, type II: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

E
Q

F
R

G
S

H
T

I
U

J
V

K
W

L
X

3-dehydroquinase, type II

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