SMTL ID : 3kip.3 (2 other biounits)

Crystal structure of type-II 3-dehydroquinase from C. albicans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-24-mer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.81 Chain B: N.26 Chain M: R.81 Chain N: N.26 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain B: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain C: N.90, H.116, I.117, T.118, V.120, R.123 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain D: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain E: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain F: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain G: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain H: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain I: Y.36, N.90, H.116, I.117, T.118, R.123 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain J: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain K: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain M: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain N: L.25, N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain O: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain P: N.90, H.116, I.117, T.118, R.123 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain Q: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain R: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain S: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain T: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain U: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain V: N.90, H.116, I.117, T.118 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain W: N.90, H.116, I.117, T.118, R.123 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain X: N.90, H.116, I.117, T.118 Ligand excluded by PLIP

8 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: E.69, T.97, S.98 Chain B: E.69, T.97, S.98 Chain C: E.69, T.97, S.98 7 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: A:E.69, A:T.97, A:T.97, B:T.97, C:T.97, C:T.97 Water bridges: A:V.99 TRS.7: 9 residues within 4Å: Chain D: E.69, T.97, S.98 Chain E: E.69, T.97, S.98 Chain F: E.69, T.97, S.98 6 PLIP interactions: 2 interactions with chain F, 2 interactions with chain D, 2 interactions with chain E Hydrogen bonds: F:T.97, D:E.69, D:T.97, E:T.97, E:T.97 Water bridges: F:V.99 TRS.11: 10 residues within 4Å: Chain G: E.69, T.97, S.98 Chain H: E.69, T.97, S.98 Chain I: E.69, Y.94, T.97, S.98 6 PLIP interactions: 3 interactions with chain G, 1 interactions with chain H, 2 interactions with chain I Hydrogen bonds: G:E.69, G:T.97, H:T.97, I:T.97, I:T.97 Water bridges: G:V.99 TRS.15: 12 residues within 4Å: Chain J: E.69, Y.94, T.97, S.98 Chain K: E.69, Y.94, T.97, S.98 Chain L: E.69, Y.94, T.97, S.98 6 PLIP interactions: 2 interactions with chain K, 2 interactions with chain J, 2 interactions with chain L Hydrogen bonds: K:T.97, K:T.97, J:T.97, J:T.97, L:E.69, L:T.97 TRS.19: 10 residues within 4Å: Chain M: E.69, T.97, S.98 Chain N: E.69, T.97, S.98 Chain O: E.69, Y.94, T.97, S.98 6 PLIP interactions: 3 interactions with chain M, 2 interactions with chain O, 1 interactions with chain N Hydrogen bonds: M:E.69, M:T.97, M:T.97, O:T.97, O:S.98, N:E.69 TRS.22: 10 residues within 4Å: Chain P: E.69, T.97, S.98 Chain Q: E.69, Y.94, T.97, S.98 Chain R: E.69, T.97, S.98 7 PLIP interactions: 2 interactions with chain P, 2 interactions with chain Q, 3 interactions with chain R Hydrogen bonds: P:T.97, Q:T.97, Q:T.97, R:E.69, R:T.97, R:S.98 Water bridges: P:V.99 TRS.27: 10 residues within 4Å: Chain S: E.69, Y.94, T.97, S.98 Chain T: E.69, T.97, S.98 Chain U: E.69, T.97, S.98 6 PLIP interactions: 2 interactions with chain S, 3 interactions with chain T, 1 interactions with chain U Hydrogen bonds: S:T.97, T:E.69, T:T.97, T:T.97, U:T.97 Water bridges: S:V.99 TRS.31: 9 residues within 4Å: Chain V: E.69, T.97, S.98 Chain W: E.69, T.97, S.98 Chain X: E.69, T.97, S.98 6 PLIP interactions: 2 interactions with chain X, 1 interactions with chain W, 3 interactions with chain V Hydrogen bonds: X:E.69, X:T.97, W:T.97, V:E.69, V:T.97 Water bridges: V:V.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trapani, S. et al., Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-05-12

Peptides

3-dehydroquinase, type II: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

3-dehydroquinase, type II

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