SMTL ID : 3kr3.1

Crystal structure of IGF-II antibody complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: V.35, R.37, R.40 Chain B: S.30, N.31, S.53 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.35, B:S.53 EDO.2: 5 residues within 4Å: Chain B: L.150, S.186, L.187, S.188 Chain C: T.179 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Water bridges: C:S.177, C:T.179 Hydrogen bonds: B:S.186, B:S.188 EDO.3: 8 residues within 4Å: Chain B: G.9, G.10, M.117, T.119, P.156, E.157, P.158, P.211 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.9, B:E.157 Water bridges: B:M.117, B:E.157 EDO.4: 5 residues within 4Å: Chain C: P.81, R.109, K.170, D.171, S.172 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dransfield, D.T. et al., A human monoclonal antibody against insulin-like growth factor-II blocks the growth of human hepatocellular carcinoma cell lines in vitro and in vivo. Mol.Cancer Ther. (2010)

Release Date

2010-06-16

Peptides

Insulin-like growth factor II: A
antibody-Fab (heavy chain): B
antibody-Fab (light chain): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

C
L

Insulin-like growth factor II

antibody-Fab (heavy chain)

antibody-Fab (light chain)

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