- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x C- G- C- A- U- G- C- G: RNA (5'-R(*CP*GP*CP*AP*UP*GP*CP*G)-3')(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.2: 4 residues within 4Å:- Chain A: L.21, P.22, G.23, F.24
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:L.21, A:G.23, H2O.1, H2O.2, H2O.2
MG.3: 4 residues within 4Å:- Chain A: R.94
- Chain D: R.101, W.113
- Ligands: C-G-C-A-U-G-C-G.12
No protein-ligand interaction detected (PLIP)MG.7: 3 residues within 4Å:- Chain B: P.104, P.105, P.107
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:P.104, B:P.105, H2O.5
MG.8: 3 residues within 4Å:- Chain B: L.21, P.22, G.23
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.21, B:G.23, H2O.5
MG.11: 3 residues within 4Å:- Ligands: C-G-C-A-U-G-C-G.1, C-G-C-A-U-G-C-G.12, MG.22
No protein-ligand interaction detected (PLIP)MG.13: 4 residues within 4Å:- Chain C: L.21, P.22, G.23, F.24
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:L.21, C:G.23, H2O.10, H2O.11, H2O.11
MG.14: 4 residues within 4Å:- Chain B: R.101, W.113
- Chain C: R.94
- Ligands: C-G-C-A-U-G-C-G.1
No protein-ligand interaction detected (PLIP)MG.18: 3 residues within 4Å:- Chain D: P.104, P.105, P.107
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:P.104, D:P.105, H2O.14
MG.19: 3 residues within 4Å:- Chain D: L.21, P.22, G.23
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:L.21, D:G.23, H2O.14
MG.22: 3 residues within 4Å:- Ligands: C-G-C-A-U-G-C-G.1, MG.11, C-G-C-A-U-G-C-G.12
No protein-ligand interaction detected (PLIP)- 10 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 3 residues within 4Å:- Chain A: F.24, R.94
- Chain D: P.105
Ligand excluded by PLIPCL.5: 2 residues within 4Å:- Chain A: R.89, L.100
Ligand excluded by PLIPCL.6: 2 residues within 4Å:- Chain A: I.84, H.85
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain B: F.24, P.93
Ligand excluded by PLIPCL.10: 2 residues within 4Å:- Chain B: T.26, K.98
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain B: P.105
- Chain C: F.24, R.94
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain C: R.89, L.100
Ligand excluded by PLIPCL.17: 2 residues within 4Å:- Chain C: I.84, H.85
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain D: F.24, P.93
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain D: T.26, K.98
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leung, D.W. et al., Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat.Struct.Mol.Biol. (2010)
- Release Date
- 2010-01-26
- Peptides
- Polymerase cofactor VP35: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x C- G- C- A- U- G- C- G: RNA (5'-R(*CP*GP*CP*AP*UP*GP*CP*G)-3')(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leung, D.W. et al., Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat.Struct.Mol.Biol. (2010)
- Release Date
- 2010-01-26
- Peptides
- Polymerase cofactor VP35: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B