SMTL ID : 3l7a.1

Crystal Structure of Glycogen Phosphorylase DK2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x DKY: 1-(3-deoxy-3-fluoro-beta-D-glucopyranosyl)-4-[(phenylcarbonyl)amino]pyrimidin-2(1H)-one(Non-covalent)

DKY.1: 19 residues within 4Å: Chain A: G.136, L.137, N.283, D.284, N.285, F.286, F.287, H.342, H.378, T.379, A.384, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:H.378, A:T.379 Hydrogen bonds: A:G.136, A:L.137, A:N.285, A:N.285, A:N.285, A:F.286, A:Y.574, A:E.673, A:G.676, A:G.676 Water bridges: A:G.138, A:N.283, A:T.379, A:A.674, A:T.677 pi-Cation interactions: A:H.342 DKY.2: 19 residues within 4Å: Chain B: G.136, L.137, N.283, D.284, N.285, F.286, F.287, H.342, H.378, T.379, A.384, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:H.378, B:T.379 Hydrogen bonds: B:G.136, B:L.137, B:N.285, B:N.285, B:N.285, B:F.286, B:H.378, B:G.676, B:G.676 Water bridges: B:G.138, B:N.283, B:A.674, B:T.677 pi-Cation interactions: B:H.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsirkone, V.G. et al., 1-(3-Deoxy-3-fluoro-beta-d-glucopyranosyl) pyrimidine derivatives as inhibitors of glycogen phosphorylase b: Kinetic, crystallographic and modelling studies. Bioorg.Med.Chem. (2010)

Release Date

2010-10-20

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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