SMTL ID : 3l88.2 (3 other biounits)

Crystal structure of the human Adenovirus type 21 fiber knob

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain B: N.81, L.93, K.94, N.95, S.108 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.95, B:S.108, B:S.108 GOL.2: 7 residues within 4Å: Chain B: G.80, N.81, L.82, P.92, L.93, S.108 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.82, B:L.93, B:S.108, B:S.108 GOL.3: 5 residues within 4Å: Chain C: E.177, S.178, P.179, E.180, S.181 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.178, C:S.181

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain C: D.57, N.60, I.183 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.57, C:N.60 NA.5: 3 residues within 4Å: Chain C: T.139, Y.141, D.142 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.142, C:D.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cupelli, K. et al., Structure of adenovirus type 21 knob in complex with CD46 reveals key differences in receptor contacts among species B adenoviruses. J.Virol. (2010)

Release Date

2010-04-14

Peptides

Fiber protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Fiber protein

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