SMTL ID : 3l88.4 (3 other biounits)

Crystal structure of the human Adenovirus type 21 fiber knob

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

5 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: L.83, T.84, D.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.84, A:D.85 NA.2: 1 residues within 4Å: Chain A: N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NA.5: 2 residues within 4Å: Chain B: D.85 Ligands: NA.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.85 NA.6: 1 residues within 4Å: Ligands: NA.5 No protein-ligand interaction detected (PLIP) NA.7: 7 residues within 4Å: Chain C: V.59, N.60, Q.61, M.62, F.63, A.184, L.186 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.59, C:F.63

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: I.9, N.10, T.11, K.96, S.97 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: K.109 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cupelli, K. et al., Structure of adenovirus type 21 knob in complex with CD46 reveals key differences in receptor contacts among species B adenoviruses. J.Virol. (2010)

Release Date

2010-04-14

Peptides

Fiber protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

Fiber protein

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