SMTL ID : 3lm1.2 (1 other biounit)

Crystal Structure Analysis of Maclura pomifera agglutinin complex with p-nitrophenyl-GalNAc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-4-4-mer

Ligands

3 x LEC: 4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside(Non-covalent)

LEC.1: 9 residues within 4Å: Chain A: G.1, F.47, E.76, Y.78, V.80, G.121, Y.122, W.123, D.125 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.78 Hydrogen bonds: A:G.1, A:G.1, A:E.76, A:G.121, A:Y.122, A:W.123, A:W.123 Water bridges: A:G.1, A:Y.78 pi-Stacking: A:Y.122 LEC.2: 9 residues within 4Å: Chain C: G.1, F.47, E.76, Y.78, V.80, G.121, Y.122, W.123, D.125 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.78, C:W.123 Hydrogen bonds: C:G.1, C:G.1, C:G.121, C:Y.122, C:W.123, C:W.123 pi-Stacking: C:Y.122 LEC.3: 8 residues within 4Å: Chain E: G.1, F.47, E.76, Y.78, G.121, Y.122, W.123, D.125 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:Y.78 Hydrogen bonds: E:G.1, E:G.1, E:G.121, E:Y.122, E:W.123, E:W.123 pi-Stacking: E:Y.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses. Glycobiology (2010)

Release Date

2010-09-22

Peptides

Agglutinin alpha chain: ACEG
Agglutinin beta-2 chain: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
G

E
K

G
O

B
D

D
H

F
L

H
P

Agglutinin alpha chain

Agglutinin beta-2 chain

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