SMTL ID : 3m5p.1

Glucose-6-phosphate isomerase from Francisella tularensis complexed with fructose-6-phosphate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 15 residues within 4Å: Chain A: I.148, G.150, S.151, S.201, K.202, S.203, T.206, G.263, Q.345, E.349, Q.501, V.504, K.508 Chain B: Q.379, H.380 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.150, A:S.151, A:S.151, A:K.202, A:S.203, A:S.203, A:T.206, A:Q.345, A:E.349, A:E.349, A:K.508, A:K.508, B:H.380 Water bridges: A:I.148, A:G.263, A:G.263, A:R.264, A:E.349 F6P.7: 15 residues within 4Å: Chain A: Q.379, H.380 Chain B: I.148, G.150, S.151, S.201, K.202, S.203, T.206, G.263, Q.345, E.349, Q.501, V.504, K.508 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.150, B:S.151, B:S.151, B:K.202, B:S.203, B:S.203, B:T.206, B:Q.345, B:E.349, B:E.349, B:K.508, B:K.508 Water bridges: B:I.148, B:G.263, B:G.263, B:R.264, B:E.349

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.126, R.131, W.132, R.133, A.231, N.232, H.253 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.126, A:K.126, A:R.131, A:R.133, A:A.231, A:N.232 GOL.3: 3 residues within 4Å: Chain A: N.390, F.392, R.461 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.461 Water bridges: A:G.389, A:N.390, A:F.392 GOL.8: 7 residues within 4Å: Chain B: K.126, R.131, W.132, R.133, A.231, N.232, H.253 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.126, B:K.126, B:R.131, B:R.133, B:A.231, B:N.232 GOL.9: 3 residues within 4Å: Chain B: N.390, F.392, R.461 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.461 Water bridges: B:G.389, B:N.390, B:F.392

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: E.64, S.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.64 Water bridges: A:K.69 NA.10: 2 residues within 4Å: Chain B: E.64, S.66 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.66 Water bridges: B:K.69

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 6 residues within 4Å: Chain A: N.41, Y.43, L.467, L.468, D.469 Chain B: K.539 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.41, A:Y.43, B:K.539 PO4.6: 3 residues within 4Å: Chain A: K.299, E.300, T.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.299 Water bridges: A:T.301 PO4.11: 6 residues within 4Å: Chain A: K.539 Chain B: N.41, Y.43, L.467, L.468, D.469 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.41, B:Y.43, A:K.539 PO4.12: 3 residues within 4Å: Chain B: K.299, E.300, T.301 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.299 Water bridges: B:T.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., X-ray crystal structure of glucose-6-phosphate isomerase from Francisella tularensis complexed with fructose-6-phosphate. To be Published

Release Date

2010-03-23

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate isomerase

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