SMTL ID : 3ma3.1

Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a naphtho-difuran ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x LYS- ARG- ARG- ARG- HIS- PRO- SER: Pimtide(Non-covalent)

LYS-ARG-ARG-ARG-HIS-PRO-SER.1: 18 residues within 4Å: Chain A: D.129, F.131, D.132, I.134, T.135, D.168, K.170, D.171, E.172, D.203, G.204, T.205, V.207, D.235, G.239, D.240, I.241, E.244 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.131, A:T.205 Hydrogen bonds: A:F.131, A:T.135, A:D.168, A:K.170, A:E.172, A:G.239 Water bridges: A:D.168, A:D.240, A:D.240 Salt bridges: A:D.129, A:D.132, A:D.171, A:E.172, A:D.235, A:D.240 pi-Cation interactions: A:F.131

1 x 01I: naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid(Non-covalent)

01I.2: 11 residues within 4Å: Chain A: L.45, V.53, A.66, K.68, I.105, L.121, E.122, V.127, L.175, I.186, D.187 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.45, A:A.66, A:I.105, A:V.127, A:L.175, A:I.186 Hydrogen bonds: A:D.187 Water bridges: A:K.68, A:F.188 Salt bridges: A:K.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Ramos, M. et al., New potent dual inhibitors of CK2 and Pim kinases: discovery and structural insights. Faseb J. (2010)

Release Date

2010-04-14

Peptides

Proto-oncogene serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene serine/threonine-protein kinase pim-1

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