SMTL ID : 8r0w.1

Pim1 in complex with 5-bromobenzo[d]oxazol-2-amine and Pimtide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.68, E.90, L.121, I.186, D.187 Ligands: XGF.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.90, A:D.187 Water bridges: A:F.50, A:F.188, A:F.188

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: D.187, G.189, S.190 Chain B: S.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.189, A:S.190 Water bridges: A:K.68, A:K.68 GOL.3: 8 residues within 4Å: Chain A: Y.234, P.242, F.243, E.248, Q.253, V.254, F.255, R.257 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.255, A:F.255, A:R.257, A:R.257 GOL.4: 6 residues within 4Å: Chain A: A.139, L.140, Q.141, E.142, V.237, R.259 No protein-ligand interaction detected (PLIP)

1 x XGF: 5-bromobenzo[d]oxazol-2-amine(Non-covalent)

XGF.5: 11 residues within 4Å: Chain A: L.45, F.50, A.66, E.122, R.123, P.124, E.125, V.127, L.175, I.186 Ligands: EDO.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.66, A:L.175 Hydrogen bonds: A:P.124 pi-Stacking: A:F.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hochban, P.M.M. et al., Pim1 in complex with 5-bromobenzo[d]oxazol-2-amine and Pimtide. To Be Published

Release Date

2024-11-13

Peptides

Serine/threonine-protein kinase pim-1: A
Pimtide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase pim-1

Pimtide

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