SMTL ID : 3mmx.4 (3 other biounits)

Bacillus anthracis NadD (baNadD) in complex with compound 1_02_3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: T.66, E.69, F.72 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.66, A:F.72 K.5: 3 residues within 4Å: Chain B: T.66, E.69, F.72 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:F.72

1 x KJZ: [(2E)-1-{4-[(2-chlorophenyl)amino]-4-oxobutanoyl}-2-(naphthalen-1-ylmethylidene)hydrazino]acetic acid(Non-covalent)

KJZ.2: 7 residues within 4Å: Chain A: Y.86, T.87, M.111, Y.114, K.117, W.118, Y.119 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.114, A:K.117, A:K.117 Hydrogen bonds: A:T.87, A:T.87, A:K.117, A:Y.119 Water bridges: A:Y.88 pi-Stacking: A:W.118

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 7 residues within 4Å: Chain A: G.11, T.12, F.13, S.157, S.158, S.159, R.162 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.12 Hydrogen bonds: A:T.12, A:T.12, A:T.12, A:F.13, A:N.41, A:S.158, A:S.158, A:S.158, A:S.158, A:S.159 Salt bridges: A:R.162 CIT.6: 8 residues within 4Å: Chain B: G.11, T.12, H.17, H.20, S.157, S.158, S.159, R.162 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:T.12 Hydrogen bonds: B:T.12, B:T.12, B:T.12, B:S.158, B:S.159 Water bridges: B:F.13, B:S.158 Salt bridges: B:H.20, B:R.162

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: Y.18, F.154, Y.173 Chain B: Y.18, Y.173 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A pi-Cation interactions: B:Y.18, A:Y.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, N. et al., Complexes of bacterial nicotinate mononucleotide adenylyltransferase with inhibitors: implication for structure-based drug design and improvement. J.Med.Chem. (2010)

Release Date

2010-07-28

Peptides

nicotinate-nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
G

nicotinate-nucleotide adenylyltransferase

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