- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3N3: (2S)-1-[(benzyloxy)carbonyl]-2,3-dihydro-1H-indole-2-carboxylic acid(Non-covalent)
3N3.1: 13 residues within 4Å:- Chain A: K.54, N.56, R.57, T.60, S.202, F.203, F.236, Q.239, L.243, L.341, K.344, I.345
- Ligands: PO4.6
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:N.56, A:R.57, A:F.203, A:F.203, A:F.236, A:L.243, A:L.341, A:I.345
- Hydrogen bonds: A:N.56
- Water bridges: A:N.56
- pi-Stacking: A:F.236
3N3.8: 13 residues within 4Å:- Chain B: K.54, N.56, R.57, T.60, S.202, F.203, F.236, Q.239, L.243, L.341, K.344, I.345
- Ligands: PO4.13
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:N.56, B:R.57, B:F.203, B:F.203, B:F.236, B:L.243, B:L.341, B:I.345
- Hydrogen bonds: B:N.56
- Water bridges: B:N.56
- pi-Stacking: B:F.236
- 2 x ZOL: ZOLEDRONIC ACID(Non-covalent)
ZOL.2: 15 residues within 4Å:- Chain A: L.97, D.100, D.104, R.109, Q.168, K.197, T.198, Y.201, Q.237, D.240, K.254
- Ligands: MG.3, MG.4, MG.5, PO4.7
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:D.100, A:R.109, A:R.109, A:K.197, A:Q.237, A:D.240
- Water bridges: A:D.100, A:S.106, A:S.106, A:S.106, A:D.171, A:T.198, A:D.240, A:K.254
- pi-Cation interactions: A:K.197
ZOL.9: 15 residues within 4Å:- Chain B: L.97, D.100, D.104, R.109, Q.168, K.197, T.198, Y.201, Q.237, D.240, K.254
- Ligands: MG.10, MG.11, MG.12, PO4.14
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:D.100, B:D.104, B:R.109, B:R.109, B:K.197, B:Y.201, B:Q.237, B:D.240
- Water bridges: B:D.100, B:S.106, B:S.106, B:S.106, B:D.171, B:D.244, B:D.244
- pi-Cation interactions: B:K.197
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.100, D.104
- Ligands: ZOL.2, MG.5
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.100, A:D.104, H2O.1, H2O.1
MG.4: 2 residues within 4Å:- Chain A: D.240
- Ligands: ZOL.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.240, H2O.1, H2O.1, H2O.1
MG.5: 5 residues within 4Å:- Chain A: D.100, D.104, D.171
- Ligands: ZOL.2, MG.3
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.100, A:D.104, H2O.1, H2O.1, H2O.1
MG.10: 4 residues within 4Å:- Chain B: D.100, D.104
- Ligands: ZOL.9, MG.12
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.100, B:D.104, H2O.7, H2O.7
MG.11: 2 residues within 4Å:- Chain B: D.240
- Ligands: ZOL.9
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.240, H2O.7, H2O.7, H2O.7
MG.12: 5 residues within 4Å:- Chain B: D.100, D.104, D.171
- Ligands: ZOL.9, MG.10
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.100, B:D.104, H2O.7, H2O.7, H2O.7
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 7 residues within 4Å:- Chain A: G.53, K.54, R.57, Q.93, R.110
- Ligands: 3N3.1, PO4.7
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:K.54, A:Q.93
- Water bridges: A:Y.55, A:R.57, A:R.57, A:R.57
- Salt bridges: A:R.57, A:R.110
PO4.7: 8 residues within 4Å:- Chain A: R.57, Q.93, R.109, F.236, D.240, K.254
- Ligands: ZOL.2, PO4.6
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Q.93
- Water bridges: A:R.109, A:R.109, A:D.240
- Salt bridges: A:R.57, A:R.109, A:K.254
PO4.13: 7 residues within 4Å:- Chain B: G.53, K.54, R.57, Q.93, R.110
- Ligands: 3N3.8, PO4.14
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:K.54, B:Q.93
- Water bridges: B:Y.55, B:R.57, B:R.57, B:R.57
- Salt bridges: B:R.57, B:R.110
PO4.14: 8 residues within 4Å:- Chain B: R.57, Q.93, R.109, F.236, D.240, K.254
- Ligands: ZOL.9, PO4.13
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:Q.93
- Water bridges: B:R.109, B:R.109, B:D.240, B:D.240
- Salt bridges: B:R.57, B:R.109, B:K.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jahnke, W. et al., Allosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery. Nat.Chem.Biol. (2010)
- Release Date
- 2010-08-18
- Peptides
- FARNESYL PYROPHOSPHATE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 3N3: (2S)-1-[(benzyloxy)carbonyl]-2,3-dihydro-1H-indole-2-carboxylic acid(Non-covalent)
- 2 x ZOL: ZOLEDRONIC ACID(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jahnke, W. et al., Allosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery. Nat.Chem.Biol. (2010)
- Release Date
- 2010-08-18
- Peptides
- FARNESYL PYROPHOSPHATE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
F