SMTL ID : 3n4q.2 (1 other biounit)

Human cytomegalovirus terminase nuclease domain, Mn soaked

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.68, E.139 Ligands: MN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.68, A:E.139, A:E.139, H2O.1, H2O.1 MN.2: 3 residues within 4Å: Chain A: D.68, D.256 Ligands: MN.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.68, A:D.256, H2O.1, H2O.1 MN.4: 4 residues within 4Å: Chain B: D.68, D.255, D.256 Ligands: MN.5 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.68, B:D.256, H2O.2 MN.5: 3 residues within 4Å: Chain B: D.68, E.139 Ligands: MN.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.68, B:E.139, H2O.1

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.44, E.223 Chain B: N.52 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:N.52, A:D.44 MG.6: 4 residues within 4Å: Chain A: N.52, T.53 Chain B: D.44, E.223 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.44, B:E.223, A:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadal, M. et al., Structure and inhibition of herpesvirus DNA packaging terminase nuclease domain. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-10-13

Peptides

TERMINASE SUBUNIT UL89 PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

TERMINASE SUBUNIT UL89 PROTEIN

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