SMTL ID : 6ey7.4 (3 other biounits)

Human cytomegalovirus terminase nuclease domain, Mn soaked, inhibitor bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.68, E.139 Ligands: MN.2, C3W.3 5 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.68, A:E.139, H2O.1, H2O.1, C3W.3 MN.2: 4 residues within 4Å: Chain A: D.68, D.256 Ligands: MN.1, C3W.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.68, A:D.256, H2O.1

1 x C3W: 4-[(4-fluorophenyl)methyl-methyl-amino]-2,4-bis(oxidanylidene)butanoic acid(Non-covalent)

C3W.3: 9 residues within 4Å: Chain A: D.68, S.78, E.139, N.141, M.184, G.185, D.256 Ligands: MN.1, MN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.142

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: P.129, L.131 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bongarzone, S. et al., Structure-Driven Discovery of alpha , gamma-Diketoacid Inhibitors Against UL89 Herpesvirus Terminase. Acs Omega (2018)

Release Date

2018-10-03

Peptides

UL89 HCMV terminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

UL89 HCMV terminase

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